BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4058.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980742|ref|YP_001351920.1| thiol:disulfide interchange pro...   319   9e-89

>gi|152980742|ref|YP_001351920.1| thiol:disulfide interchange
           protein DsbC [Janthinobacterium sp. Marseille]
          Length = 240

 Score =  319 bits (818), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 186/227 (81%), Gaps = 4/227 (1%)

Query: 29  VSAHAQAEAADSTEATIKKLIEPRLGKDAKVDSVTKTPYAGLYEIQIDGDVIYTDAKAQY 88
           VSA A+     + EA ++K IEPRLG+DAKV  V+KTPY+GLYE+Q++GD+IYTDAKAQY
Sbjct: 17  VSAFAET----AQEAAVRKAIEPRLGEDAKVVGVSKTPYSGLYEVQVNGDIIYTDAKAQY 72

Query: 89  LFIGRVVDSQTYRDYTKEKIDSLNQVPFSALPLDKAIKTVKGNGKRVIAIFEDPNCIYCK 148
           LF+GR+VD++TY+DYTK +++ +N+V FS LPL+ A+K VKGNGKRVIA+FEDPNC YCK
Sbjct: 73  LFVGRIVDTKTYQDYTKARLEEINKVAFSDLPLEAAMKQVKGNGKRVIAVFEDPNCGYCK 132

Query: 149 RLHKTLQDVDNITYYTFQYNILSPDSIVKSRNIWCAPNPSKAWNEWMVSGKEAPTAPASC 208
           R  +TL+ +++IT YTF YNILSPDSI KSRN+WC+ + +KAW++WM++GK    A   C
Sbjct: 133 RFRQTLEGINDITVYTFMYNILSPDSIAKSRNVWCSADRNKAWDDWMLNGKAPAPASDKC 192

Query: 209 NAPHEDVLALGKKLKVTGTPTIFFADGSRIPGAVDAKGLEQKLSSLK 255
             PHE VLALG+++ VTGTPTI F DGSRIPGA+DAK LE KL+S+K
Sbjct: 193 TTPHEKVLALGQRMGVTGTPTIIFTDGSRIPGAIDAKALEAKLASIK 239


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 548,843
Number of extensions: 22160
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)