BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4056.p
         (783 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory p...  1392   0.0  
gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janth...    59   2e-09

>gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory
           protein [Janthinobacterium sp. Marseille]
          Length = 782

 Score = 1392 bits (3602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/783 (87%), Positives = 737/783 (94%), Gaps = 1/783 (0%)

Query: 1   MLPSIEQRLALELAAKPVQVAAAIALLDEGATVPFIARYRKEVTGGLDDVQLRLLEERLR 60
           MLPSIEQRLA+EL AKP+Q+AAA+ALLDEGATVPFIARYRKEVTGGLDD QLRLLEERLR
Sbjct: 1   MLPSIEQRLAVELVAKPIQIAAAVALLDEGATVPFIARYRKEVTGGLDDTQLRLLEERLR 60

Query: 61  YLRELESRRAAIIASIEEQGKMTPVLLDAITHAEDKTRLEDLYLPYKPKRRTKAQIAAEA 120
           YLRELE RRAAI+ASIEEQ KMTP L+DAI HAEDKTRLEDLYLPYK KRRTKAQIA EA
Sbjct: 61  YLRELEDRRAAIVASIEEQKKMTPELMDAIMHAEDKTRLEDLYLPYKQKRRTKAQIAVEA 120

Query: 121 GLTELADALLNDPSLNPEEEAAKYIKPAFTTDNGDNPGVPDTKAALDGARQILMERFSED 180
           GLT LADALL +P+LNPEEEAAKY+KPAFT +  +NPGV DTKAALDGARQILMERF+ED
Sbjct: 121 GLTPLADALLENPALNPEEEAAKYLKPAFTVEGVENPGVADTKAALDGARQILMERFAED 180

Query: 181 AELLQSLREYITEHGVVESKVVEGKQDAGEKFADYFDYSETYSTIPSHRALALFRGRREE 240
           A LLQ+LREY+TEHG+VESKVVEGK+DAG KFADYFDYSET +TIPSHRALA+FRGRREE
Sbjct: 181 AGLLQALREYLTEHGIVESKVVEGKEDAGAKFADYFDYSETIATIPSHRALAMFRGRREE 240

Query: 241 MLNVVLRLDTEEEKPKWDAPHNPCEGRIASRFGVSNKGRPADKWLSDTVRWAWRVKVFMH 300
           MLNV LRLD+EEEKPKWDAPHNPCEGRIASRFG+SN+GRPADKWL DTVRW WRVKVFMH
Sbjct: 241 MLNVNLRLDSEEEKPKWDAPHNPCEGRIASRFGISNQGRPADKWLFDTVRWTWRVKVFMH 300

Query: 301 LETELMTNLREKAEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAIVDATGK 360
           LETELMTNLREKAE EAINVFA NLK LLLAAPAGPRATMGLDPGLRTGVKVA+VDATGK
Sbjct: 301 LETELMTNLREKAEVEAINVFALNLKALLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360

Query: 361 VVATDTIYPHQPRNDWNGSLHTLSQLAEKHNVSLISIGNGTASRETDKLAQDLIKLRPEL 420
           VV T T+YPHQPRNDW+G+LHTL+QLAEKH V+LISIGNGTASRETDKLAQDLIK+RPEL
Sbjct: 361 VVDTATVYPHQPRNDWDGTLHTLAQLAEKHKVALISIGNGTASRETDKLAQDLIKMRPEL 420

Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG 480
           KLTKIVVSEAGASVYSASEFAS+ELPD+DVS+RGAVSIARRLQDPLAELVKIDPKSIGVG
Sbjct: 421 KLTKIVVSEAGASVYSASEFASRELPDMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480

Query: 481 QYQHDVSQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540
           QYQHDV Q+QLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLN SVAQSIVSYRDMKG
Sbjct: 481 QYQHDVGQTQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNNSVAQSIVSYRDMKG 540

Query: 541 MFNSRAALREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVEKILADIKKDVK 600
           MF SRA LR VPRLGDKTFEQAAGFLRVM+G+NPLDASAVHPESYPLVEKILADIKKDVK
Sbjct: 541 MFTSRADLRAVPRLGDKTFEQAAGFLRVMSGDNPLDASAVHPESYPLVEKILADIKKDVK 600

Query: 601 SVLGQTSLLKGLSPSKYADEKFGVPTVTDILKELDKPGRDPRPEFTTATFKDGVEEIKDL 660
           S++G   +LK LSP+KYADEKFG+PT+TDILKEL+KPGRDPRPEFTTATFKDGVEEI+DL
Sbjct: 601 SIIGDEKMLKSLSPAKYADEKFGIPTITDILKELEKPGRDPRPEFTTATFKDGVEEIRDL 660

Query: 661 RVDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSYVKDPHTVVKAGQVVKVKVLEV 720
           R DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSN++VKDPHTVVKAGQVVKVKVLEV
Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720

Query: 721 DEKRKRIALTMRLNDTAPAPGARNEQRGDRTDSHRLSQHQNQRGREQAPANNAMAAAFAK 780
           DEKRKRIALTMRL+D+AP  G++ EQ+GDR DS RLSQHQNQ+ R Q  + +AMAAAFAK
Sbjct: 721 DEKRKRIALTMRLSDSAPVAGSKPEQKGDRNDSRRLSQHQNQQSR-QPDSGSAMAAAFAK 779

Query: 781 LKG 783
           LKG
Sbjct: 780 LKG 782


>gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1
           [Janthinobacterium sp. Marseille]
          Length = 571

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 657 IKDLRVDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSYVKDPHTVVKAGQVVKVK 716
           ++ L+   I+ GVV N+  +GAFVD+G   DGL+HI+ L+   V+ P  V+  GQ +  K
Sbjct: 198 METLKEGTIVTGVVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLTVGQEITAK 256

Query: 717 VLEVDEKRKRIALTMRLNDTAPAPG-ARNEQRGDR 750
           VL+ D+++ R++L ++     P  G +R   +G R
Sbjct: 257 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTR 291


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,621,940
Number of extensions: 64304
Number of successful extensions: 255
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 3
Length of query: 783
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 692
Effective length of database: 884,594
Effective search space: 612139048
Effective search space used: 612139048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 133 (55.8 bits)