BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4053.p
         (596 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980219|ref|YP_001355053.1| bifunctional shikimate kinase/3...   844   0.0  

>gi|152980219|ref|YP_001355053.1| bifunctional shikimate
           kinase/3-dehydroquinate synthase [Janthinobacterium sp.
           Marseille]
          Length = 577

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/591 (71%), Positives = 479/591 (81%), Gaps = 38/591 (6%)

Query: 3   GSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRREA 62
           G+IFLVGLMGAGKTT+GRALAKKLNKRFIDSDHEIE RTGATIP+IFEIEGE +FR+REA
Sbjct: 23  GNIFLVGLMGAGKTTVGRALAKKLNKRFIDSDHEIEERTGATIPLIFEIEGEASFRQREA 82

Query: 63  EVIRELAALPDIVLATGGGAVLRAENRENLKKGGTVVYLRASVNQILQRTGRDKNRPLLQ 122
           EVIR+L A  DIVLATGGGAVL AE+R  LK  GTV+YLRASVN I+QRT  DKNRPLLQ
Sbjct: 83  EVIRDLTAQQDIVLATGGGAVLNAESRAYLKSRGTVIYLRASVNSIVQRTSHDKNRPLLQ 142

Query: 123 IADPRRKLEELSRQRDPLYREVADFVVETNRPNVQFLVQTIISHLELSPKQEDWLVSPEP 182
             DPR+ +EELSR R+PLY EVA  V++T RPNVQFL+Q+I+S L            PE 
Sbjct: 143 TGDPRKTIEELSRIREPLYNEVAHIVIDTGRPNVQFLMQSILSQL-----------GPEH 191

Query: 183 DETVVLETSSAVLTQAADGSSTVSHHHSTQIFHGAASAQSEPHRMNQNHASSAAPLTLQV 242
                        TQAA  ++   HH  ++            H M    +S++   TLQV
Sbjct: 192 -------------TQAAAQTAIQDHHSLSK------------HDMTSQLSSTSN--TLQV 224

Query: 243 ELGERSYPIHIGHGLLDDAKLLPQYVKGKRVAIVTNDKVGPLYLDKVGNALRAAGKQVTE 302
           +LG RSYPI IG  LL D+ LL  +V G RVAIVTN  V PLYL++V  +L+AAGKQVTE
Sbjct: 225 DLGARSYPITIGQNLLGDSALLAAHVAGSRVAIVTNTVVAPLYLEQVSKSLQAAGKQVTE 284

Query: 303 IVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPFVQ 362
           IVLPDGEEEKNWA+LMKIFD LLA+KCDRKTTLIALGGGVIGD+TGFAAA+YMRGVPF+Q
Sbjct: 285 IVLPDGEEEKNWANLMKIFDVLLAEKCDRKTTLIALGGGVIGDMTGFAAAAYMRGVPFIQ 344

Query: 363 VPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELAAGIAEVI 422
           VPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATL+TL  REL++G++EVI
Sbjct: 345 VPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLNTLIARELSSGLSEVI 404

Query: 423 KHGAIIDAPFFDWIETNMARLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILNFG 482
           KHGAIIDAPFFDWIE N+ +LV+KD  ALAYAI+RSCEIKA+VVRQDEREGGLRAILNFG
Sbjct: 405 KHGAIIDAPFFDWIEANIGKLVAKDPEALAYAIKRSCEIKADVVRQDEREGGLRAILNFG 464

Query: 483 HTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSQRLGYIDHATRERIRAVTAAAGLPTVA 542
           HTFGHAIE G+GYG WLHGEAVGCGMVMAADLS RLG+ID  T++RI AV  AAGLPT+A
Sbjct: 465 HTFGHAIEAGMGYGVWLHGEAVGCGMVMAADLSHRLGFIDAQTKDRIAAVVKAAGLPTIA 524

Query: 543 PNLGTERWLDLMEVDKKNEGGAIKFILIKPLGSPLITNAPQDLLLQTLAAC 593
           PNLGTERWL+LMEVDKKNEGG IKFIL+KPLG+ +I   PQ+ LLQTL AC
Sbjct: 525 PNLGTERWLELMEVDKKNEGGQIKFILLKPLGTSVIMPVPQEALLQTLNAC 575


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,426,583
Number of extensions: 61294
Number of successful extensions: 294
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 507
Effective length of database: 891,988
Effective search space: 452237916
Effective search space used: 452237916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)