BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4052.p
         (688 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly pro...   584   e-168
gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Ja...    96   8e-21

>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly
           protein [Janthinobacterium sp. Marseille]
          Length = 686

 Score =  584 bits (1505), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/696 (44%), Positives = 445/696 (63%), Gaps = 48/696 (6%)

Query: 5   LLMLAALLTQSASAENRLHAIDLHHRPDGVTLELRLLHPVDAALVGNFQLIDPPQLVLDL 64
           LL +  L   +++ EN + +I  + +   V +++ L  P+    VG F +  P ++ LD 
Sbjct: 14  LLFIGGL---ASAQENAIQSITANQQGSNVVVKIALKSPLVKPPVG-FTINSPARIALDF 69

Query: 65  PRTTAAAHLARSIAGSGLLKRILLASDDERLRLQLQLKQAVIHRLRTEGDSLLVDLE--- 121
             T  A        G G ++   +    +R RL   L + + +    + + ++V ++   
Sbjct: 70  ANTANATGKGLQDIGLGDVRNANIVQVGDRSRLVFNLTRPLNYATTIDANIVIVTIDGTG 129

Query: 122 -----LRPAADPA----------ELHAIELQRGPLGEARMTVELGSSSHTVQVRQLGRRL 166
                L     P            L  I+ +RG  GE R+ ++L ++  +V VRQ G+++
Sbjct: 130 GIATPLNAVGLPVPVAQANAGRQALRDIDFRRGNNGEGRIVIDLPNNQVSVDVRQQGKKI 189

Query: 167 IADIAGASLPPALRRQVEVGRFATPLTHYSAYPHEGGVRLVLEAQGQWRYQAYQSGQRLM 226
             D   A+LP  LRR+++V  F TP+   +       V + +E +G W + AYQS  +L+
Sbjct: 190 EVDFMKATLPDVLRRRLDVADFGTPVNVVTTQQQGDNVHMTIEPKGLWEHSAYQSDTQLV 249

Query: 227 IDVLPVLAGSTSPGLQDGKTYAGDRLSLNFQNIDVRTALQVLADFSGVNLVASDAVTGQL 286
           I+V P+       G Q  + Y GD+LSLNFQN++VR  LQV+ADF+G+N++ SD V+G L
Sbjct: 250 IEVKPLKEEPNKLG-QGVRDYRGDKLSLNFQNVEVRAVLQVIADFTGLNIITSDTVSGNL 308

Query: 287 SLRLKDLPWDQALDMILQARGLEMRRSGEVLWIAPREEMLARERQELEQKAMIADLEPLH 346
           +LRLKD+PWDQALD+++QA+GL+MR++G VLWIAPR+E+L +E+ ELEQ+A IA+LEP+ 
Sbjct: 309 TLRLKDVPWDQALDIVMQAKGLDMRKNGTVLWIAPRDELLTKEKLELEQRAQIAELEPIK 368

Query: 347 AESFQLNYQRADTLRKALGIGEDGNTQANRRNSLLSRRGSAMIDSHTNQLLVTDTLAVLA 406
            E+FQLNYQ+A++ ++  GI  DG ++     S+L++RGSA++D  TNQL +TD  + L 
Sbjct: 369 TETFQLNYQKAESFKQIFGI--DGGSR-----SILTKRGSAVVDPRTNQLFITDIASKLE 421

Query: 407 NVRKLIERIDVASRQVLIEARIVEADDSFARNLGVKLGLAVTTRGAALGNTYAAVGEQSG 466
            +R L+ + D+A+RQV+IEARIVEADD F+ +LG KL   V  +G      Y   G Q+ 
Sbjct: 422 EIRALVAKTDIATRQVMIEARIVEADDKFSSSLGAKLSFGVQNQG-----NYQLGGRQTS 476

Query: 467 QGSPSSQNPQAAPTGQAPAGPTLRDPALNLRAEALSGATPGSFAFTLFNAAAQRFLNVEL 526
                        T  A   PTL   A+NL A  ++  TPGS A TLFNAAA RF+ +EL
Sbjct: 477 -------------TTTAIGPPTLGGSAVNLPASTINSNTPGSVALTLFNAAATRFIGLEL 523

Query: 527 SALEADGRGKIVSSPRLVTADQQTALIEQGEEIPYQQAAGNGTTSTAFKKANLKLEVTPQ 586
           SALEADG+GK++SSPR++TADQ  ALIEQG E+PYQQA  +G TS +F+KANLKLEVTPQ
Sbjct: 524 SALEADGKGKVISSPRVITADQLKALIEQGTELPYQQATSSGATSVSFRKANLKLEVTPQ 583

Query: 587 ITPDGNVILDVDVNKDSRGSVTPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNDQET 646
           ITPDGNVILDVDVNKD+ G  T  G AI+TKH+KT+V +++GGTVVIGGI+ QT+ D  +
Sbjct: 584 ITPDGNVILDVDVNKDTVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVS 643

Query: 647 RVPLLGEIPVLGALFRSQSKVRDKTELLIFLTPRIV 682
           +VP  G+IPV G LF++  +  DKTELLIFLTP+I+
Sbjct: 644 KVPFFGDIPVFGNLFKTTGRTNDKTELLIFLTPKIL 679


>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC
           [Janthinobacterium sp. Marseille]
          Length = 429

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 9/184 (4%)

Query: 505 TPGSFAFTLFNAAAQRFLNVELSALEADGRGKIVSSPRLVTADQQTALIEQGEEIPYQQA 564
           TP S AF L  + +   +N  +  +E +G  ++++ P L+    Q+A    G E+P  Q+
Sbjct: 205 TPVSQAFNLLGSTS---VNARVKLIEQNGLARVLARPSLIALSGQSASFLAGGELPVPQS 261

Query: 565 AGNGTTSTAFKKANLKLEVTPQITPDGNVILDVD---VNKDSRGSVTPGGL---AINTKH 618
            G GTT+  +K   + L VTP +     + L V     + D   ++    +   AI+T+ 
Sbjct: 262 GGLGTTTIIYKAFGIGLTVTPTVLSANRIALKVAPEASDLDYANAIVTNNMMIPAISTRR 321

Query: 619 IKTKVQVEDGGTVVIGGIYTQTDNDQETRVPLLGEIPVLGALFRSQSKVRDKTELLIFLT 678
            +T +++ DG + VIGG+ ++T      +VP LG++P+LG  FRS    +D+ EL+I  T
Sbjct: 322 TETTLELGDGESFVIGGLVSRTTKSNVNKVPFLGDLPILGPFFRSMQYSQDEKELVIIAT 381

Query: 679 PRIV 682
           P +V
Sbjct: 382 PHLV 385


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,483,411
Number of extensions: 61967
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 688
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 598
Effective length of database: 888,291
Effective search space: 531198018
Effective search space used: 531198018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)