BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4047.p (771 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Jan... 1138 0.0 gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [... 863 0.0 gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic pep... 83 8e-17 >gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Janthinobacterium sp. Marseille] Length = 762 Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/771 (71%), Positives = 652/771 (84%), Gaps = 13/771 (1%) Query: 4 SLRILLGLFGTLFGLIVMALLGVAFIVALTYPKLPDLDTLTDYRPKIPLRIFSADGVLIG 63 +LR+ LG+ G + GL V+ L + F + + YP LP LD+LTDYRPKIPLRIFSAD VLIG Sbjct: 2 ALRLTLGVIGLITGLGVIGALILVFALTMAYPNLPALDSLTDYRPKIPLRIFSADNVLIG 61 Query: 64 EFGEERRNLVHFKDIPDIMKKAVLAIEDDRFYEHGGVDYQGILRATFSNLSGGG-GGAST 122 EFGEERRNLVH K+IPDIMKKAVLAIEDDRF+EHGGVDY GI+RA NLSGG GAST Sbjct: 62 EFGEERRNLVHIKEIPDIMKKAVLAIEDDRFFEHGGVDYVGIVRAAVHNLSGGARQGAST 121 Query: 123 ITQQVARNFFLTSNEPTFLQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAY 182 ITQQVARNFFL+S ++ ++ YE+ LAWKIE NL+KDQILEVYMNQIYLGQRAY Sbjct: 122 ITQQVARNFFLSS------EQTLKRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAY 175 Query: 183 GFASAAQIYFGKQLKDITIAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRMRQLGY 242 GF+SAAQIY+GK+L+ ITIAEAAMLAGLPKAPSAYNPVVNPKRA ARQQYIL RM QLGY Sbjct: 176 GFSSAAQIYYGKKLQQITIAEAAMLAGLPKAPSAYNPVVNPKRAKARQQYILQRMYQLGY 235 Query: 243 ITEAQYQEAKDEELRVKGDSSAFGMHAEYVAEMARQLIYAQYKDETYTRGLNVFTTITKA 302 I+E +Y +AK+EEL++K +SS FG+HAEYVAEM RQL+Y Q+K+ETYTRGLNVFTTITKA Sbjct: 236 ISEPEYTQAKEEELKIKTNSSEFGVHAEYVAEMTRQLVYEQFKEETYTRGLNVFTTITKA 295 Query: 303 DQDAAYIALRRGIIDYERRHGYRGPEGYMDLPENASKEVVEDAVEVELADHPDSDDMVAA 362 DQDAAY+A+RRG++DYE+RHGYRGPE Y+++P N KE E A+EVELA+HPDSDD+VAA Sbjct: 296 DQDAAYLAVRRGVMDYEKRHGYRGPESYIEIPNN--KEEAEAAIEVELANHPDSDDLVAA 353 Query: 363 VVLEAKPKEITAMLATGEEISISGAGLGFGANLLSDKAPPQKKIRRGAIIRVFQDGSNWI 422 VVLEA PK + A+L +GEEI I GAGL F ANLLS+KA P K+++RGA+IRV Q+G W Sbjct: 354 VVLEATPKLVRAVLVSGEEIQIEGAGLTFAANLLSEKAAPNKRVKRGAVIRVMQEGKAWS 413 Query: 423 ITQMPEVESAFVSVNSHDGAIRSLVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSSSLEK 482 I QMPEV+SAFV+ N++DGAIR+LVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYS+SLEK Sbjct: 414 IIQMPEVQSAFVAANTNDGAIRALVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSASLEK 473 Query: 483 GLSPATIINDAPLTFT--QTGGQVWQPKNYGGKFEGPISMRRALQKSINLVSIRILERVG 540 GLSP+TIINDAP++F QTGGQ W+PKNY GK++GP++MR+ L KS N++SIRIL ++G Sbjct: 474 GLSPSTIINDAPISFDAGQTGGQPWEPKNYDGKYDGPMTMRKGLAKSKNMISIRILHKIG 533 Query: 541 VKYAQEYITRFGFDADKNPPYLTLALGAGNVTPLQMVGAYSVFANGGYKINPYLITKVTD 600 KY QEYITRFGFDADKNPPYLTLALGAG VTPLQM AYSVFANGGYKI+PY+I+++TD Sbjct: 534 AKYGQEYITRFGFDADKNPPYLTLALGAGAVTPLQMAAAYSVFANGGYKISPYMISRITD 593 Query: 601 NNGEVLSQAKPATADDESNRVIDARNAFIMDSMLRDVVRHGTAVKALSLKRTDLAGKTGT 660 NG++LS+ KP A DE+NR ID RNAF+MDSML+ VV GTA+KA++LKRTDLAGKTGT Sbjct: 594 ANGKLLSEVKPDMAGDEANRAIDPRNAFLMDSMLKGVVTSGTAIKAMALKRTDLAGKTGT 653 Query: 661 TNDSMDAWFAGYQPGLTAIAWIGYDQPKSLGDRETGGGLALPVWISYMSKALKDVPNVDR 720 TNDS DAWFAGYQP + IAWIG+DQPK+LG+RETGGGLALP+WI+YM KALKD P V+R Sbjct: 654 TNDSFDAWFAGYQPNIVGIAWIGFDQPKNLGNRETGGGLALPIWINYMQKALKDAPIVER 713 Query: 721 KVPDGVIESGGEYYYAEFPPSAMVRDLGMGDHGGMTPEEEKAKTQMKNELF 771 VP+G+I GEYYYAE PP VR+L G+ G P K ++KNELF Sbjct: 714 TVPEGIITVNGEYYYAESPPGLGVRNLDAGEASG--PSNAPTKDEVKNELF 762 >gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [Janthinobacterium sp. Marseille] Length = 807 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/735 (57%), Positives = 545/735 (74%), Gaps = 14/735 (1%) Query: 19 IVMALLGVAFIVALTYPKLPDLDTLTDYRPKIPLRIFSADGVLIGEFGEERRNLVHFKDI 78 I +ALLGVA+ + P LP +D LTDY+PKIPLR+++AD VLIGEFGEERR+ V +I Sbjct: 35 IFVALLGVAYTLLFIVPNLPSIDALTDYKPKIPLRVYTADNVLIGEFGEERRDFVSVANI 94 Query: 79 PDIMKKAVLAIEDDRFYEHGGVDYQGILRATFSNL-SGGGGGASTITQQVARNFFLTSNE 137 P MK A++AIED+ FYEHGGVD G++RA +NL GASTIT QVAR F LT Sbjct: 95 PASMKNAIIAIEDNNFYEHGGVDVLGVVRAGLANLVRSRSQGASTITMQVARTFLLTR-- 152 Query: 138 PTFLQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAYGFASAAQIYFGKQLK 197 +K + E+ LA++IE NLTKDQILE+YMNQIYLG+RAYGF SAA+IYFGK ++ Sbjct: 153 ----KKTYSRKLQEVILAYRIEKNLTKDQILELYMNQIYLGERAYGFGSAARIYFGKPIQ 208 Query: 198 DITIAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRMRQLGYITEAQYQEAKDEELR 257 D+TIAE+AMLAG+PKAP++ NPVVNPKRA RQQYIL RM +L +IT+ QY+ A E+L Sbjct: 209 DLTIAESAMLAGIPKAPASANPVVNPKRATERQQYILKRMHELKFITDEQYKHAAAEKLN 268 Query: 258 VKGDSSAFGMHAEYVAEMARQLIYAQYKDETYTRGLNVFTTITKADQDAAYIALRRGIID 317 V D + F HAE+ AE RQ +YAQYKDETYT G V+TT+TKADQDAAY A+RRG++D Sbjct: 269 VLPDGNRFRTHAEHAAETVRQFMYAQYKDETYTSGFTVYTTLTKADQDAAYDAVRRGVLD 328 Query: 318 YERRHGYRGPEGYMDLPENASKEVVEDAVEVELADHPDSDDMVAAVVLEAKPKEITAMLA 377 Y+RRHGYRGPE +DLP+++ E ++ A++ L +PDSDD+ AAVV EA K I A L Sbjct: 329 YDRRHGYRGPEATIDLPKDS--EDLQQAIDDTLVKYPDSDDLRAAVVTEANAKLIRAQLL 386 Query: 378 TGEEISISGAGLGFGANLLSDKAPPQKKIRRGAIIRVFQDG-SNWIITQMPEVESAFVSV 436 +GE + I+G GL F A+ LSDKA QKK++ G++IRV QD W I+Q+PEV +AFVSV Sbjct: 387 SGETVEITGDGLRFAASYLSDKATAQKKLQPGSVIRVVQDNKKKWGISQLPEVAAAFVSV 446 Query: 437 NSHDGAIRSLVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSSSLEKGLSPATIINDAPL- 495 N DG+IR+LVGGFDF N+F+HVTQAWRQPGS+ KPF+YS++LEKG SP T+INDAPL Sbjct: 447 NGQDGSIRALVGGFDFALNQFDHVTQAWRQPGSTIKPFVYSAALEKGFSPGTLINDAPLA 506 Query: 496 --TFTQTGGQVWQPKNYGGKFEGPISMRRALQKSINLVSIRILERVGVKYAQEYITRFGF 553 + ++ G + W P N GK++GP++MR L++S NLVSIRIL ++ YA E++T FGF Sbjct: 507 EDSESEQGSKAWNPGNDNGKYDGPVTMRTGLKRSKNLVSIRILRKITPAYAIEHLTHFGF 566 Query: 554 DADKNPPYLTLALGAGNVTPLQMVGAYSVFANGGYKINPYLITKVTDNNGEVLSQAKPAT 613 +ADK P LTL LG G+VTPLQM GAY+VFANGG+K+ PYLI KV D G+VL +A+ Sbjct: 567 EADKQPANLTLTLGTGSVTPLQMAGAYAVFANGGFKVPPYLIQKVVDARGKVLLEAQHPQ 626 Query: 614 ADDESNRVIDARNAFIMDSMLRDVVRHGTA-VKALSLKRTDLAGKTGTTNDSMDAWFAGY 672 A DE+ R ID RNAFI DSM+RDVVR GT + + L R+DLAGKTGTT+++MD WFAGY Sbjct: 627 AGDETARAIDPRNAFITDSMMRDVVRSGTGYLASQRLGRSDLAGKTGTTDNAMDGWFAGY 686 Query: 673 QPGLTAIAWIGYDQPKSLGDRETGGGLALPVWISYMSKALKDVPNVDRKVPDGVIESGGE 732 + A+AW+GYD+P+SLG RE GG LALP+WI YM AL+ P + + P GV + G+ Sbjct: 687 GRDIVAVAWMGYDKPRSLGSREFGGTLALPIWIDYMRTALRGKPEMAKVAPPGVTQVDGD 746 Query: 733 YYYAEFPPSAMVRDL 747 + Y E+ V+ L Sbjct: 747 WSYDEYVNGDAVKSL 761 >gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic peptidoglycan transglycosylase [Janthinobacterium sp. Marseille] Length = 231 Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 69 RRNLVHFKDIPDIMKKAVLAIEDDRFYEHGGVDYQGILRATFSNLSGGG--GGASTITQQ 126 + + + I + +K+A++A ED F EH GVD+ + +A N+ G G STITQQ Sbjct: 61 KHKWIPYNRISNNLKRAIIASEDSNFSEHEGVDWDALQKAYEKNIKKGKVVAGGSTITQQ 120 Query: 127 VARNFFLTSNEPTFLQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAYGFAS 186 +A+N FL S + ++L+K E+ + + +E + K++I E+Y+N + G +G + Sbjct: 121 LAKNLFL-SGDRSYLRKGQ-----EVIITYMLEYWMDKERIFEIYLNVVEWGVGIFGAEA 174 Query: 187 AAQIYFGKQLKDITIAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRM 237 AAQ Y+G + +AA LA + P Y+ R IL RM Sbjct: 175 AAQHYYGVSAAQLGAPQAARLAVMLPNPRFYDGHRGTAYLARRTDLILRRM 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,872,086 Number of extensions: 82404 Number of successful extensions: 256 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 247 Number of HSP's successfully gapped: 3 Length of query: 771 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 680 Effective length of database: 884,594 Effective search space: 601523920 Effective search space used: 601523920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)