BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4046.p
         (394 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981688|ref|YP_001354613.1| 6-aminohexanoate-dimer hydrolas...   124   1e-29

>gi|152981688|ref|YP_001354613.1| 6-aminohexanoate-dimer hydrolase
           [Janthinobacterium sp. Marseille]
          Length = 445

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 156/330 (47%), Gaps = 32/330 (9%)

Query: 64  SHPQPLPTALRAL--DIQ-VPWKDGSSLSVSDFLKSTATQAFVVVQDGRVVYERYIDGDD 120
           S P  LP ALR+   D++ +P     +++  + L +  T   VV+  G +VYERY     
Sbjct: 93  SAPAALPYALRSDLDDVRFMPINGKQTMTWKESLPANYTDGIVVLHKGSIVYERYFGVLK 152

Query: 121 ANTRFASFSVAKSFVSALTGVALQQGKIKSLNEPIGRYLNRTEIA-PAYANITIGQLLDM 179
           A+ +  + SV KS V  L  + + +G+I +  + +  Y+   E+A  A+ N TI Q+LDM
Sbjct: 153 ADGQHGAMSVTKSVVGTLGAMLVAEGRIDA-GKRVADYV--PELAQSAFGNATIRQVLDM 209

Query: 180 RSGIDVQENYGGSLVSPVVRMFVSTDLQR---FIARRDGLRF--------TPGSRFEYRS 228
            +G+   E+Y                L +   +   R    F          G  F Y++
Sbjct: 210 TTGLKYSEDYADPNAEVWAHAQAGNPLPKPRDYTGPRSYYEFLQTVQPQGRHGEAFGYKT 269

Query: 229 IDTLVLSRVLARATGMRLSDFAQQALWEPLGMEQDATWSVDSQEHGVEKAFCCLNTTARD 288
           ++T VL  V+AR TG  +++   + +W  LG EQDA ++VDS   G   A   LNT  RD
Sbjct: 270 VNTDVLGWVIARVTGRNVAELLSERIWRRLGAEQDAYFTVDSI--GTPFAGGGLNTGLRD 327

Query: 289 FSRLGLLYLDGGRVGQQQIVSPTWAAEPR-----QPLNNSN-----TLDYRNGWWIPPGN 338
            +R G +  + GR   QQIV      + R     +    +N        YRN WW+   +
Sbjct: 328 LARFGEMLRNNGRYNGQQIVPKAVVDDIRRGGDKEAFAKANYSLLPGWSYRNMWWVT--H 385

Query: 339 AVDRDFSAIGVFGQYLYINPATRTVIVKLS 368
             D  ++A GV GQ +YI+P    VIV+ +
Sbjct: 386 NEDGAYTARGVHGQTIYIDPKAEMVIVRFA 415


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 895,230
Number of extensions: 36735
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 309
Effective length of database: 906,776
Effective search space: 280193784
Effective search space used: 280193784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)