BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4045.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981295|ref|YP_001354876.1| ExsB protein [Janthinobacterium...   399   e-112

>gi|152981295|ref|YP_001354876.1| ExsB protein [Janthinobacterium
           sp. Marseille]
          Length = 235

 Score =  399 bits (1024), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 208/228 (91%)

Query: 29  ALVLFSGGQDSTTCLAWALSRYARVETIGFDYGQRHAIELQVRPALLQKMQTFSPDWQAR 88
           ALVLFSGGQDSTTC+AWAL RYA+VETIGFDYGQRHA+EL+VRP +L+ ++  +P+W  +
Sbjct: 7   ALVLFSGGQDSTTCVAWALKRYAKVETIGFDYGQRHAVELEVRPDVLRSLRDINPEWNKK 66

Query: 89  LGEDHMIDLSLIGKISDTALTRDVAIAMQDNGLPNTFVPGRNLLFMTVAATLAYRRGLNV 148
           LGEDHMIDLSLI KIS+TA+T+DV I M +NGLPNTFVPGRNLLFMTVAAT+AYRRGL+V
Sbjct: 67  LGEDHMIDLSLISKISNTAMTQDVEITMMENGLPNTFVPGRNLLFMTVAATVAYRRGLDV 126

Query: 149 LVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWIDKADTWSLAESLGGS 208
           LVGGMCETDFSGYPDCRDDTMKALQVALNLGMAT+LK+ETPLMWIDKA+TW +A+ LGG 
Sbjct: 127 LVGGMCETDFSGYPDCRDDTMKALQVALNLGMATRLKLETPLMWIDKAETWKMAQDLGGK 186

Query: 209 ALVDLIRADTHTCYLGERGQLHDWGHGCGKCPACELRARGYQQYAARK 256
            LVDLIRA THTCYLGERG LHDWG+GCG CPACELRARGY  +AA++
Sbjct: 187 PLVDLIRAGTHTCYLGERGALHDWGYGCGTCPACELRARGYANFAAQE 234


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 631,293
Number of extensions: 25494
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)