BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4044.p
         (260 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982545|ref|YP_001354875.1| hypothetical protein mma_3185 [...   258   3e-70
gi|152982283|ref|YP_001354874.1| hypothetical protein mma_3183 [...   173   9e-45

>gi|152982545|ref|YP_001354875.1| hypothetical protein mma_3185
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  258 bits (658), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/248 (51%), Positives = 163/248 (65%), Gaps = 4/248 (1%)

Query: 11  TTLRTLAALPLAALLA-SAPAQAAEGPHPVEKRPFNLPPSAELHYAISAKQSGIDLKGEG 69
           T  R L ++ LA ++A SA A  A+ P    KR FNLPPSA+L+YAI+A Q G+ L G  
Sbjct: 4   TLYRNLESMLLATVIATSASATLAQTPA---KRSFNLPPSADLNYAINANQRGLPLNGTA 60

Query: 70  LVKWSQNKTAYSVTTETRAMLLGKILETSSEGAIDAYGLAPSRFIEKRLRREPTTTTFNR 129
           ++ W  +KT YS+TTETRAMLLGKILE  SEG IDA+GLAP    EKR R++PTT TFNR
Sbjct: 61  VLHWKTDKTTYSITTETRAMLLGKILEAKSEGTIDAFGLAPLTSTEKRYRKDPTTVTFNR 120

Query: 130 EQNKITFTESAESFPLQGGEQDRTGITWQFVAIARANAAKMKPGSEWKFFVAGPRDAEQW 189
           +   I+F+ S  S+P++GGEQDR  I WQ   IAR+   K K G+     V G +DA+ W
Sbjct: 121 DAKTISFSASDASYPIKGGEQDRNSIVWQLATIARSTPNKFKTGASIPVTVVGQKDADAW 180

Query: 190 TFKVVGREKVKTAQGETEALHLFRNPPPDDQAQKLDIWLAPKMEWYPVRLKFTDPNGDYI 249
            FKV   EK+KTA G+   + + R     D  QKLDIW AP MEWYP R++ T+P GD+I
Sbjct: 181 VFKVSKAEKIKTATGDLNTVKVSRVVKDGDNGQKLDIWFAPSMEWYPARVRITEPEGDFI 240

Query: 250 EQVLDSVN 257
           EQ L  V+
Sbjct: 241 EQTLTKVD 248


>gi|152982283|ref|YP_001354874.1| hypothetical protein mma_3183
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  173 bits (439), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 119/215 (55%), Gaps = 2/215 (0%)

Query: 44  FNLPPSAELHYAIS-AKQSGIDLKGEGLVKWSQNKTAYSVTTETRAMLLGKILETSSEGA 102
            +LPPSA L Y I    + G  + G G + W  +   Y+V  +   +L    L   S G+
Sbjct: 289 IDLPPSASLKYDIQKIPKEGSPMYGSGTISWHTDGHQYTVDGDF-GVLFITALRFRSSGS 347

Query: 103 IDAYGLAPSRFIEKRLRREPTTTTFNREQNKITFTESAESFPLQGGEQDRTGITWQFVAI 162
           I   G+ P  + EKR RR  T T F RE + I+F+ S +S+P  GGEQDR  I WQ   I
Sbjct: 348 ITDIGIVPELYSEKRFRRSETNTHFQREPSLISFSASTQSYPRTGGEQDRASIIWQLAGI 407

Query: 163 ARANAAKMKPGSEWKFFVAGPRDAEQWTFKVVGREKVKTAQGETEALHLFRNPPPDDQAQ 222
            R ++ K   G+    FVAG RDAE W   V+G+E++      T A H+ R P      Q
Sbjct: 408 GRGDSGKFVAGASIDLFVAGTRDAETWHILVIGQEEIMIDGVSTTAWHVARAPKRGSYDQ 467

Query: 223 KLDIWLAPKMEWYPVRLKFTDPNGDYIEQVLDSVN 257
            LDIWLAP+  WYPVRL++T+ NGDY++  L S+N
Sbjct: 468 NLDIWLAPQQNWYPVRLRYTEANGDYLDMSLTSLN 502


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 559,011
Number of extensions: 21930
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 179
Effective length of database: 921,564
Effective search space: 164959956
Effective search space used: 164959956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)