BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4043.p
         (334 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982283|ref|YP_001354874.1| hypothetical protein mma_3183 [...   238   5e-64
gi|152982545|ref|YP_001354875.1| hypothetical protein mma_3185 [...   152   3e-38

>gi|152982283|ref|YP_001354874.1| hypothetical protein mma_3183
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  238 bits (606), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 144/222 (64%), Gaps = 3/222 (1%)

Query: 114 YHTSAPPSALLQYDVTGT-KDQQPAYGRGSIDWHNEGNHYRVEGKAKALFFTLLNFTSVG 172
           Y    PPSA L+YD+    K+  P YG G+I WH +G+ Y V+G    LF T L F S G
Sbjct: 287 YKIDLPPSASLKYDIQKIPKEGSPMYGSGTISWHTDGHQYTVDGDFGVLFITALRFRSSG 346

Query: 173 ELDAWGVSPELYTEQKGFKSATNTHFNRARNLVSFSASTISYPRRGGEQDRASLIWQLAA 232
            +   G+ PELY+E++  +S TNTHF R  +L+SFSAST SYPR GGEQDRAS+IWQLA 
Sbjct: 347 SITDIGIVPELYSEKRFRRSETNTHFQREPSLISFSASTQSYPRTGGEQDRASIIWQLAG 406

Query: 233 IGRGDATQIQPGAVIDLFVAGVRDGELWRVQVLGQEALDLPIGHLQTWHLVRMPKPGSYD 292
           IGRGD+ +   GA IDLFVAG RD E W + V+GQE + +       WH+ R PK GSYD
Sbjct: 407 IGRGDSGKFVAGASIDLFVAGTRDAETWHILVIGQEEIMIDGVSTTAWHVARAPKRGSYD 466

Query: 293 DRVDIWLAPQHEWYPVRVRYTDLRPPGDYTQLDLSELKPPEP 334
             +DIWLAPQ  WYPVR+RYT+    GDY  + L+ L    P
Sbjct: 467 QNLDIWLAPQQNWYPVRLRYTEAN--GDYLDMSLTSLNVSAP 506


>gi|152982545|ref|YP_001354875.1| hypothetical protein mma_3185
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  152 bits (384), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 3/237 (1%)

Query: 96  ATVDASPDDSQAPATGKQYHTSAPPSALLQYDVTGTKDQQPAYGRGSIDWHNEGNHYRVE 155
           ATV A+   +    T  +   + PPSA L Y +   +   P  G   + W  +   Y + 
Sbjct: 15  ATVIATSASATLAQTPAKRSFNLPPSADLNYAINANQRGLPLNGTAVLHWKTDKTTYSIT 74

Query: 156 GKAKALFF-TLLNFTSVGELDAWGVSPELYTEQKGFKSATNTHFNRARNLVSFSASTISY 214
            + +A+    +L   S G +DA+G++P   TE++  K  T   FNR    +SFSAS  SY
Sbjct: 75  TETRAMLLGKILEAKSEGTIDAFGLAPLTSTEKRYRKDPTTVTFNRDAKTISFSASDASY 134

Query: 215 PRRGGEQDRASLIWQLAAIGRGDATQIQPGAVIDLFVAGVRDGELWRVQVLGQEALDLPI 274
           P +GGEQDR S++WQLA I R    + + GA I + V G +D + W  +V   E +    
Sbjct: 135 PIKGGEQDRNSIVWQLATIARSTPNKFKTGASIPVTVVGQKDADAWVFKVSKAEKIKTAT 194

Query: 275 GHLQTWHLVRMPKPGSYDDRVDIWLAPQHEWYPVRVRYTDLRPPGDYTQLDLSELKP 331
           G L T  + R+ K G    ++DIW AP  EWYP RVR T+  P GD+ +  L+++ P
Sbjct: 195 GDLNTVKVSRVVKDGDNGQKLDIWFAPSMEWYPARVRITE--PEGDFIEQTLTKVDP 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 757,534
Number of extensions: 31195
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 250
Effective length of database: 910,473
Effective search space: 227618250
Effective search space used: 227618250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)