BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4042.p (431 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino a... 605 e-174 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 380 e-106 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 61 2e-10 gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 58 1e-09 >gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 423 Score = 605 bits (1559), Expect = e-174, Method: Compositional matrix adjust. Identities = 297/416 (71%), Positives = 346/416 (83%), Gaps = 2/416 (0%) Query: 18 LLALASVC-AAVAAPLPPIRIGMIDGLSGPFANAGEAVVRNISYAIERINARGGVSLPDG 76 +LA +C +VA PIRIGMIDG+SG FANAGEAVVRN+ AI+ +NARGGV LPDG Sbjct: 8 ILATVLLCVCSVAQAAEPIRIGMIDGMSGAFANAGEAVVRNLQLAIDAVNARGGVRLPDG 67 Query: 77 KHLLQLSTFDNKLGVEDSLVQLRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDHR 136 H L L FDNK GVE+SL++ ++L D+RIPF+++GNSSAVAAAL+DAVNKHNQR D+R Sbjct: 68 AHPLALEIFDNKSGVEESLLEFKRLADQRIPFMVQGNSSAVAAALLDAVNKHNQRASDNR 127 Query: 137 VLFLNYSAVDPTLTNEKCSFWHFRFDASADMRMQALTEAIKADPATKKVYLIGQDYSFGR 196 VLFLNYSAVDP LTNEKCS+WHFRFDA+ADMRM ALTE IK D K+VYLIGQDYSFGR Sbjct: 128 VLFLNYSAVDPALTNEKCSYWHFRFDANADMRMHALTEVIKRDARAKRVYLIGQDYSFGR 187 Query: 197 QVAKAAREQLALKRPDIAIVGDELHPIGKIKDFSPYIAKMRSAGADAVITGNWGNDLTLL 256 VA+AAR QLA KRPDI IVGDELHPIGKIKDF+PYIAK++++GADAVI+GNWGNDLTLL Sbjct: 188 LVAQAARTQLAAKRPDIQIVGDELHPIGKIKDFAPYIAKIKASGADAVISGNWGNDLTLL 247 Query: 257 VKAARDAGFKAKFYTFYANSLGAPAAIGEAGVGVVRAVAEWHPNAG-GNPGSPSDAYYLE 315 VKAA++ G KFYTFY N LGAPAAIG+AGV VRAVAEWHPN G G S S +Y Sbjct: 248 VKAAKEFGLNTKFYTFYGNGLGAPAAIGDAGVDRVRAVAEWHPNVGDGMADSASGRFYSA 307 Query: 316 FRKRYPQPKDDYLYLRMQVMIDMLVKAIEKAGTTDPKAVAYALEGAHYQNAFHQATMRAE 375 FR+RYPQPKDDY++LRM +MI+ML AIEKA +TD +AVA ALEGAHY+NAFH ATMRA Sbjct: 308 FRQRYPQPKDDYVHLRMHIMIEMLATAIEKARSTDARAVAQALEGAHYRNAFHDATMRAS 367 Query: 376 DHQLIQPLYLMQMQRADSGGIRFDNEGSGFGFRTERFIPAEQTALPSSCRMQRPPR 431 DHQLIQPLY+ M+R GG+RFDNEGSG+GF+TE ++PA TALP+SCR+QRP R Sbjct: 368 DHQLIQPLYVSVMRRKSDGGMRFDNEGSGYGFKTELYLPAASTALPTSCRLQRPLR 423 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/422 (45%), Positives = 271/422 (64%), Gaps = 15/422 (3%) Query: 8 RLPLRVCSAALLALASVCAAVAAPLPPIRIGMIDGLSGPFANAGEAVVRNISYAIERINA 67 R+P + SAA AS A +RI ID LSGPFA G+ ++ + E N Sbjct: 4 RIPSLILSAAFALSASHSFA-----ENVRIAFIDPLSGPFAPVGQNLLHSFQTIAELSNQ 58 Query: 68 RGGVSLPDGKHLLQLSTFDNKLGVEDSLVQLRQLTDERIPFLIEGNSSAVAAALIDAVNK 127 + G + +++ FDNK ++SL+QL+ D+ ++ +GN S VA ALIDA+NK Sbjct: 59 KQW----GGSNTVEIVGFDNKGSPQESLIQLKSAIDQGYRYITQGNGSGVALALIDAINK 114 Query: 128 HNQREPDHRVLFLNYSAVDPTLTNEKCSFWHFRFDASADMRMQALTEAIKADPATKKVYL 187 HN+R P VLFLN+SA DP LTN KCSFWHFRFDA+++M+M++LT + DP KK+Y+ Sbjct: 115 HNERNPGKEVLFLNHSAGDPALTNSKCSFWHFRFDANSEMKMESLTTFMAKDPNIKKIYV 174 Query: 188 IGQDYSFGRQVAKAAREQLALKRPDIAIVGDELHPIGKIKDFSPYIAKMRSAGADAVITG 247 IGQ+Y+ G++++++ R + KRPD+ IVGD+LHPIG++KDFSPY+AKM+++GAD +IT Sbjct: 175 IGQNYALGQEISRSTRAYMGRKRPDVQIVGDDLHPIGQVKDFSPYVAKMKASGADTIITA 234 Query: 248 NWGNDLTLLVKAARDAGFKAKFYTFYANSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPGS 307 NWG DL LLVKAARDA KA FYT YA + G P A+G AG+ V+ VA W+ N N Sbjct: 235 NWGADLALLVKAARDADLKANFYTLYAATTGVPTAMGAAGLDRVKYVAYWNLN---NETY 291 Query: 308 PSDAYYLEFRKRYPQPKDDYLYLRMQVMIDMLVKAIEKAGTTDPKAVAYALEGAHYQNAF 367 F+K+Y DDY + ++ ML KA ++AG+TDP VA A+EG ++ Sbjct: 292 AGKEIIEGFKKKY---NDDYYAMASYTVLAMLGKAFKEAGSTDPLKVALAMEGMKVKSLN 348 Query: 368 HQATMRAEDHQLIQPLYLMQMQRADSGGIRFDNEGSGFGFRTERFIPAEQTALPSSCRMQ 427 + MR DHQ QPLY+ + ++ ++FD E +G+G+RT++ I A A P+SC+M+ Sbjct: 349 GEVEMRKSDHQAQQPLYIATWVKQNNTDVKFDQENTGYGWRTDQKIDAYVAAQPTSCQMK 408 Query: 428 RP 429 RP Sbjct: 409 RP 410 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 165/389 (42%), Gaps = 35/389 (8%) Query: 16 AALLALASVCAAVAAPLPPIRIGMIDGLSGPFANAGEAVVRNISYAIERINARGGVSLPD 75 AA + LA A A I+IG+ + L+GP A AG V A + +N GGV Sbjct: 10 AACIGLAMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVL--- 66 Query: 76 GKHLLQLSTFDNKLGVEDSLVQLRQLT-DERIPFLIEGNSSAVAAALIDAVNKHNQREPD 134 GK +QL DNK +++ + +L +++P L+ SS A++ + ++ Sbjct: 67 GKK-IQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYE----- 120 Query: 135 HRVLFLNYSAVDPTLTNEKCSFWHFRFDASADMRMQALTEAIKA-DPATKKV--YLIGQD 191 + L A + + W FR ++ M QA ++ I +PA KK ++ D Sbjct: 121 ---VPLVVEAASSSKITTAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNND 177 Query: 192 YSFGRQVAKAAREQLALKRPDIAIVGDE-LHPIGKIKDFSPYIAKMRSAGADAVITGNWG 250 + G A + L+ IAI E + P + D S +A ++ +G+D V + Sbjct: 178 WGLG----AAVEFKKMLEAKGIAIGRTETMTP--DMTDLSAQLAALKGSGSDTVFVTSGI 231 Query: 251 NDLTLLVKAARDAGFKAKFYT----FYANSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPG 306 LTL ++ A + + T F L P G ++ A W P +P Sbjct: 232 EQLTLAIRQAGEQRLPQRIITTGGAFPEPLLKTPGPKGYVSQHLLF-FAPWAPERAKHP- 289 Query: 307 SPSDAYYLEFRKRYPQPKDDYLYLRMQVMIDMLVKAIEKAGTTDPKAVAYAL-----EGA 361 + + A+ ++ R + R I + +AI+ AG +P A+ AL +G Sbjct: 290 AVAKAFMDGWKSRGLELAGQVEGFRGFDAILTIAEAIKLAGKAEPAAIRDALWKVQVKGT 349 Query: 362 HYQNAFHQATMRAEDHQLIQP-LYLMQMQ 389 + AF + + ++ P +Y+++++ Sbjct: 350 NGDIAFSKVGVAGKESGQANPNVYVVELK 378 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 39/361 (10%) Query: 34 PIRIGMIDGLSGPFANAGEAVVRNISYAIERINARGGVSLPDGKHLLQLSTFDNKLGVED 93 P+R+G+I G GE +R + + RINA GG+ + ++Q T +D Sbjct: 41 PLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVELVIQEET-----SPKD 95 Query: 94 SLVQLRQLTDERIPFLIEG-NSSAVAAALIDAVNKHNQREPDHRVLFLNYSAVDPTLTNE 152 ++ + R+L + ++G SS V+ AL A + R P +F + + D Sbjct: 96 TIDRFRKLVLQEKVDCVQGIVSSGVSLALAPAA--EDSRMP---TIFWDGTTQDGVKETM 150 Query: 153 KCSFWHFR-FDASADMRMQALTEAIKADPATKKVYLIGQDYSFGRQVAKAAREQLALKRP 211 + FR D + M +L K++ + DYS+GR A + L Sbjct: 151 PKPKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQALLKKYGI 210 Query: 212 DIAIVGDELHPIGKIKDFSPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYT 271 + +V ++ IG + D + +A +++A D + + DL + +K A +AG Sbjct: 211 EHEVVSEQWSKIGNL-DLTSNVAALKAAKPDLIFSSLLFADLPVFMKQAHNAGL------ 263 Query: 272 FYANSLGAPAAIGEAGVGVVRAVAEWHPNA---GGNPGSPSD-----------AYYLEFR 317 + G + AG E+ P G N D +Y + Sbjct: 264 ----TEGTRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYFDDPKASATQKEFVKWYADKY 319 Query: 318 KRYPQPKDDYLYLRMQVMIDMLVKAI-EKAGTTDPKAVAYALEGAHYQNAFHQATMRAED 376 K YP + D Y M V + KA+ K P+ + A+ G ++ + MRA D Sbjct: 320 KDYPHWEADRAYFSMMVYKAGVEKALAAKKSWPTPEEICAAIPGVQIESLGGKGAMRA-D 378 Query: 377 H 377 H Sbjct: 379 H 379 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 909,075 Number of extensions: 35602 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 4 Length of query: 431 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 345 Effective length of database: 903,079 Effective search space: 311562255 Effective search space used: 311562255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)