BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4041.p
         (285 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982629|ref|YP_001354872.1| hypothetical protein mma_3182 [...   100   1e-22

>gi|152982629|ref|YP_001354872.1| hypothetical protein mma_3182
          [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  100 bits (249), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 5/91 (5%)

Query: 3  NQEQMPGAGSVADTIEFMKKMWSSM-----GAPAMATPSLSVEDINKKIADLKTVASWLE 57
          N   +PG  ++A+T+EF+K MW  M     G P M  P+LSVE+INK+I DLK V +WL 
Sbjct: 5  NMPNLPGFDAMAETMEFVKNMWGGMKPPATGIPGMVMPTLSVEEINKQITDLKAVEAWLT 64

Query: 58 LNLNMLKATIQTLEVQSATLSTLQAMSAIMA 88
           N+NML+ TIQ LEVQSAT+STL++M    A
Sbjct: 65 ANMNMLRGTIQALEVQSATISTLRSMGQTFA 95


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.306    0.121    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 324,791
Number of extensions: 7641
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 203
Effective length of database: 917,867
Effective search space: 186327001
Effective search space used: 186327001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)