BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4038.p
         (175 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981686|ref|YP_001354861.1| hypothetical protein mma_3171 [...   170   4e-44
gi|152981731|ref|YP_001351757.1| hypothetical protein mma_0067 [...    97   6e-22

>gi|152981686|ref|YP_001354861.1| hypothetical protein mma_3171
           [Janthinobacterium sp. Marseille]
          Length = 160

 Score =  170 bits (431), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 5/155 (3%)

Query: 7   RTATLAITAALLAAAPLSQAHDYKLGQLDIGHPYARATVPGQPAAGAYVSIENKGSTPDR 66
           R  + A    L++A+  S AHDY+ G + + HPYARATV GQ + GAY+++ENKGS+ D 
Sbjct: 4   RQLSFAALTVLISAS--SMAHDYRAGDIYVDHPYARATVAGQTSGGAYLTLENKGSSADT 61

Query: 67  LVAVSSPVAKSGEIHTMAMEG-NVMKMRELDGGLEVKPGQKITMQPGNGYHIMLMGLSKP 125
           LV+ +SP A S EIHTM+M   NVM+MRE+ G L++K  +KITMQPG+GYHIMLMGL  P
Sbjct: 62  LVSATSPAAASVEIHTMSMTADNVMRMREV-GSLDIKGKEKITMQPGDGYHIMLMGLKAP 120

Query: 126 LQAGDKVPVTLTFEKAGKVEVSFNVEDRAATTAGK 160
           L+AGDK+P+TLTF+KAGK+E +  VE+  A  AGK
Sbjct: 121 LKAGDKLPLTLTFKKAGKIEAAIVVEE-GAKKAGK 154


>gi|152981731|ref|YP_001351757.1| hypothetical protein mma_0067
           [Janthinobacterium sp. Marseille]
          Length = 145

 Score = 97.1 bits (240), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 7/132 (5%)

Query: 31  LGQLDIGHPYARATVPGQPAAGAYVSIENKGSTPDRLVAVSSPVAKSGEIHTMAMEGNVM 90
           + Q+ +   + RATVP Q A GA++ + +   T  RL+   SPVA++ EIH MA++ +VM
Sbjct: 18  IAQVSVNDAWVRATVPQQKATGAFMQLNSVSGT--RLIDARSPVARA-EIHEMAVQDHVM 74

Query: 91  KMRELDGGLEVKPGQKITMQPGNGYHIMLMGLSKPLQAGDKVPVTLTFEKAGKVE--VSF 148
           +MR++  GL++  GQ + ++PG G+HIM   L +P++ GD +P+TLTFE   K    +  
Sbjct: 75  RMRQI-SGLDLPAGQTVALKPG-GFHIMFFDLKQPVREGDVIPLTLTFEDKDKKRETLEL 132

Query: 149 NVEDRAATTAGK 160
            V  RA  +A K
Sbjct: 133 QVPARALNSAAK 144


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 347,409
Number of extensions: 13521
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 98
Effective length of database: 936,352
Effective search space: 91762496
Effective search space used: 91762496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)