BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4033.p (264 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 97 1e-21 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 89 2e-19 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 89 3e-19 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 86 2e-18 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 86 3e-18 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 27/226 (11%) Query: 19 NPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDR 78 N L+G+ ++V G+ +A+IG +G+GKST L I+G +D G I + G+ + + + R Sbjct: 16 NQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVAGSHLGKSELELR 75 Query: 79 -----AGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLAI 133 GM+ + F N+ ++ GR I + E LA+ Sbjct: 76 NLRLKVGMIFQQF---------------NLFPHLSVGRNIMISPMIVKGVSEKDARALAM 120 Query: 134 LNL---GLENRLTDRIGLLSGGQRQAVSLLMA-SLQPSRILLLDEHTAALDPKTAAFVLE 189 NL GL + LSGGQ+Q V++ A S++P + LL DE T+ALDP+ VL Sbjct: 121 KNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEP-QALLCDEVTSALDPELVNEVLN 179 Query: 190 LTAKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPE 235 + + EG +T +MVTH MR A + DR V +HQG+ V ++ PE Sbjct: 180 VVRGLAHEG-MTLIMVTHEMRFAREVCDRVVFMHQGK-VHEIGAPE 223 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 10/208 (4%) Query: 21 ALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDRAG 80 AL +SL+ P G+ A++G +G GK+T L I+G D G++ +DG D + + +R Sbjct: 17 ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRER-- 74 Query: 81 MVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLAILNLGLEN 140 V VFQ + +T+ EN+A + R A R ++ + +L L + Sbjct: 75 QVGFVFQH--YALFKHMTVFENIAFGL-----RVRPAATRPSESQIKEKVTKLLELVQLD 127 Query: 141 RLTDRIG-LLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAEGK 199 L DR LSGGQRQ ++L A R+LLLDE ALD K + ++ + Sbjct: 128 WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLH 187 Query: 200 LTTMMVTHSMRQALDYGDRTVMLHQGRV 227 +T++ VTH +AL+ D+ V++++G V Sbjct: 188 VTSIFVTHDQEEALEVADQIVLMNKGNV 215 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 38/246 (15%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDS 60 M++ D+ + + + ALR SL++ GQF ++G++GAGKST L I+ + Sbjct: 1 MIQLNDVSVRYG-----DTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSA 55 Query: 61 GKIEIDGTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIR 120 G I++ G + + + RV Q T + +++ +A RR Q + Sbjct: 56 GTIDVVGLGLLQNR---------RVLQAHRRQT--GMVFQQHQLIA----RRTALQNVLM 100 Query: 121 GKM------RELFREKLAILNLGLENRLTDRIGLL----------SGGQRQAVSLLMASL 164 G++ R LF +GL R DR+GLL SGGQ+Q V + A Sbjct: 101 GRLGYHTTLRSLFPLSQEEQRIGL--RALDRVGLLHKALTRVDQLSGGQQQRVGIARALT 158 Query: 165 QPSRILLLDEHTAALDPKTAAFVLELTAKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQ 224 Q +++L DE A+LDP T+ VLE+ +I E ++ ++ H + AL Y DR V L Sbjct: 159 QQPKLILADEPVASLDPATSEKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAH 218 Query: 225 GRVVLD 230 G+V+ D Sbjct: 219 GKVMFD 224 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 18/227 (7%) Query: 24 GLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAW--DRAGM 81 G SL++P GQ +A+IG NGAGKST N ISG + SG I ++G+ + ++ + +R G+ Sbjct: 23 GASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLNGSSIAGQKPYQINRRGL 82 Query: 82 VARVFQDPMAGTCEALTIEENMALAM--ARGRRRGFQFAIRGKMRELFREKLAILNLGLE 139 +R FQ + L++ EN+ A+ + G R F + G R + + +GL Sbjct: 83 -SRSFQ--ITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQDVNQRAEQVMEEIGLH 139 Query: 140 NRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAEGK 199 R LLS +++A+ + + +++LLLDE TA + + +EL KI A GK Sbjct: 140 KRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSESDAAVELIRKISA-GK 198 Query: 200 LTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLDVPDLLK 246 T +MV H M DR +L G ++ D PD ++ Sbjct: 199 -TLLMVEHDMDVVFGLADRIAVLVYGEII---------ACDTPDNIR 235 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 18/218 (8%) Query: 22 LRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDRAGM 81 LRG+SL V G+ ++++G NG GK+T L + G L V +G + +DG D+T+ + RA + Sbjct: 17 LRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSLDGRDITKLKPHQRAAL 76 Query: 82 -VARVFQDPMAGTCEA-LTIEENMALAMA--RGRRRGFQFAIRGKMRELFREKLAILNLG 137 +A V P A LT+EEN+ + MA G++ I+G++ ELF Sbjct: 77 GIAYV---PQGREIFARLTVEENLLMGMATKSGKKAS---VIKGEVYELFPV-------- 122 Query: 138 LENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAE 197 L+ L R G LSGGQ+Q +++ A L ++++LDE T + P + + + + Sbjct: 123 LKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLRER 182 Query: 198 GKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPE 235 G + ++ A + D V+L +G VV S E Sbjct: 183 GDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQE 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 575,678 Number of extensions: 22692 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 59 Length of query: 264 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 182 Effective length of database: 917,867 Effective search space: 167051794 Effective search space used: 167051794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)