BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4032.p
         (160 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthino...   267   2e-73

>gi|152980476|ref|YP_001354860.1| RNA methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  267 bits (682), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 137/159 (86%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYH+YA M+VH
Sbjct: 6   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 65

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
            DW +FL     + P +  RMFA+TTHGSTPFA +AFQPGD FVFGSET+GL    RESF
Sbjct: 66  ADWQAFLNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKGLETSLRESF 125

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P +QRIRLPMRP NRS+NLSNTVAVVVYEAWRQN + GG
Sbjct: 126 PPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNNFAGG 164


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 434,189
Number of extensions: 17701
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 84
Effective length of database: 940,049
Effective search space: 78964116
Effective search space used: 78964116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)