BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4031.p
         (283 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980936|ref|YP_001354845.1| Comf family protein [Janthinoba...   205   3e-54

>gi|152980936|ref|YP_001354845.1| Comf family protein
           [Janthinobacterium sp. Marseille]
          Length = 217

 Score =  205 bits (521), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 140/216 (64%), Gaps = 9/216 (4%)

Query: 39  WLQRLLAQLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCAMPMPVTGKELR- 97
           W +R   +LP  LP+SCALC   G   LCAPC  +F++R+  RC QCA P+   G+  R 
Sbjct: 8   WSRRCALRLPATLPTSCALCSIPGTSALCAPCRGQFFSRRPPRCTQCAYPL-THGEHARS 66

Query: 98  -CGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIYDATRRNPVPGS 156
            CG CL+   AFDATIVA DY AP D L LALKFG  L LAPL A+LI DA  R      
Sbjct: 67  FCGNCLRTPRAFDATIVAGDYSAPIDHLVLALKFGNQLALAPLFAQLIVDALLR------ 120

Query: 157 DVQLPLPTVLAPVPLGLARLQERGFNQALEIARPLGQLLDIPVQARLLERKKETQAQSAL 216
           +    +PT++A VPLG  RL ERGFNQALEIARPL + + IP+  +L++R +ET  QS+L
Sbjct: 121 ERAFAMPTIMAAVPLGEKRLAERGFNQALEIARPLSKAIAIPLLPQLIQRSRETAMQSSL 180

Query: 217 PVGARARNVRSAFALPFAAMDQVRGLHVGIVDDVMT 252
           P  AR  N+R AF L   A D VRG H+ IVDDV+T
Sbjct: 181 PPDARHHNMRDAFTLAPQAADLVRGQHIAIVDDVLT 216


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 543,647
Number of extensions: 19038
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 201
Effective length of database: 917,867
Effective search space: 184491267
Effective search space used: 184491267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)