BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4030.p
         (314 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982753|ref|YP_001354844.1| biotin synthesis protein bioC [...   402   e-113

>gi|152982753|ref|YP_001354844.1| biotin synthesis protein bioC
           [Janthinobacterium sp. Marseille]
          Length = 312

 Score =  402 bits (1033), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/315 (63%), Positives = 241/315 (76%), Gaps = 5/315 (1%)

Query: 1   MSLPPPSASAKLSAPIDLPLVRRRFGQPQRVAESDFLRREVSARMQERLALVKIDPREVL 60
           MS  PP + +KLSAPIDL  VR  F  P R  ES FLRREV+ RM ERLALVKI P  VL
Sbjct: 1   MSSLPPQSDSKLSAPIDLNRVRDLFSDPVRTLESGFLRREVATRMHERLALVKIAPTHVL 60

Query: 61  DAGCGEGADLPVLQKRYPQAQVIGLDGAYAMLAKAADHQRGAQTAMNRLFGSINKWLGSP 120
           DAGCGEGADL  LQKR+PQA ++GLD + AMLA A + Q    ++MNRL   + +WL + 
Sbjct: 61  DAGCGEGADLTTLQKRFPQAAMLGLDASSAMLAAAQESQVAGLSSMNRL---LQQWLPAV 117

Query: 121 PS-GNGPQLACADFARLPLAPNALDLVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSC 179
               +G  L C +FA+LPL  NA+DLVWSNLALHWHPQPD+VF EWRRVLR +GLLMFSC
Sbjct: 118 MGRDSGASLICGNFAQLPLGINAVDLVWSNLALHWHPQPDQVFVEWRRVLRQDGLLMFSC 177

Query: 180 FGPDTLREVRSAFEQIDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETITVTYETPQRL 239
           FGPDT +E+R+AF   D  PH LPFVDMHDFGDMLVNAGFSTPVMDMET+TVTY + ++L
Sbjct: 178 FGPDTFKELRAAFAAADAEPHVLPFVDMHDFGDMLVNAGFSTPVMDMETLTVTYGSVEKL 237

Query: 240 LEDVRAWGGNPLESRRRSMMSRSQYQRLLAAFEAMRKPDGKIPLSFEIVYGHAFRPVPKT 299
           + DVRA GGNPL++RRR ++ +  +QR +   E  R+ DGKIPL+FE++YGHAFRP P+ 
Sbjct: 238 MADVRAMGGNPLDTRRRGLLGKQAWQRAMDVLEQSRRADGKIPLTFEVIYGHAFRPAPRA 297

Query: 300 TAAGESIIRFERPPR 314
           TA+GESIIRF+ PPR
Sbjct: 298 TASGESIIRFD-PPR 311


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 734,642
Number of extensions: 30466
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 231
Effective length of database: 914,170
Effective search space: 211173270
Effective search space used: 211173270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)