BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4029.p
         (102 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983132|ref|YP_001354843.1| hypothetical protein mma_3153 [...    70   2e-14

>gi|152983132|ref|YP_001354843.1| hypothetical protein mma_3153
          [Janthinobacterium sp. Marseille]
          Length = 132

 Score = 70.5 bits (171), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 48/89 (53%), Gaps = 15/89 (16%)

Query: 23 FAILCMVSLTVALGFTLHGAWTILFFSVIELLAVGAAMLVYARHATDCEVVALESG---- 78
          +++LC+VSL +AL FT  GAW IL F+VIEL AVG A L YARHATDCE + L       
Sbjct: 4  YSVLCVVSLIIALSFTWRGAWYILGFAVIELAAVGCAFLCYARHATDCEHIVLTDDLLVI 63

Query: 79 -----------GAVRACGAVHEPVATTRL 96
                       +R C  V  P    RL
Sbjct: 64 HLIQADKARQFKLIRHCTKVDPPAKRHRL 92


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 233,234
Number of extensions: 7536
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 1,221,021
Length adjustment: 69
Effective length of query: 33
Effective length of database: 965,928
Effective search space: 31875624
Effective search space used: 31875624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 122 (51.6 bits)