BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4027.p (539 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979815|ref|YP_001354841.1| cytochrome c oxidase subunit I ... 953 0.0 gi|152980480|ref|YP_001354329.1| cytochrome o ubiquinol oxidase ... 399 e-112 >gi|152979815|ref|YP_001354841.1| cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] Length = 533 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/509 (92%), Positives = 488/509 (95%) Query: 31 GWRRWLLATNHKDIGTLYLWFSFTMLLSGGVLALLIRAELFQPGLQFFRPEFFNQLTTMH 90 GWRRW+LATNHKDIGTLYLWFSF MLLSGG LA+LIRAELFQPGLQ +PEFFNQLTTMH Sbjct: 25 GWRRWVLATNHKDIGTLYLWFSFVMLLSGGFLAMLIRAELFQPGLQLMQPEFFNQLTTMH 84 Query: 91 GLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAALLLAGSFLVPGGA 150 G++MVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAA+LLA SFLVPGGA Sbjct: 85 GIMMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAAILLAVSFLVPGGA 144 Query: 151 TAAGWTLYAPLSTQMGPGMDMGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLMKMPMF 210 TAAGWTLYAPLSTQMGPGMDM IFA+HIMGASSIMGSINIIVT+LNMRAPGMTLMKMPMF Sbjct: 145 TAAGWTLYAPLSTQMGPGMDMAIFALHIMGASSIMGSINIIVTVLNMRAPGMTLMKMPMF 204 Query: 211 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 270 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY Sbjct: 205 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 264 Query: 271 IMILPAFGIVSQIIPAFARKPLFGYASMVYATASIAILSFIVWAHHMFTTGMPVTAQLFF 330 IMILPAFGIVS IIP FARK LFGYASMVYATASIAILSF+VWAHHMFTTGMPVTAQLFF Sbjct: 265 IMILPAFGIVSHIIPTFARKQLFGYASMVYATASIAILSFMVWAHHMFTTGMPVTAQLFF 324 Query: 331 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 390 MYATMLIAVPTGVKIFNW+ATMWRGSMTFETPMLF++GFIFVFTMGGFTGLILAVTPIDI Sbjct: 325 MYATMLIAVPTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTMGGFTGLILAVTPIDI 384 Query: 391 QMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLITFNITF 450 Q+QDTYYVVAHFHYVLVAGSLFALFAG+YYWGPKWTGFMYNE RGK HFW SLI FNITF Sbjct: 385 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNETRGKIHFWGSLILFNITF 444 Query: 451 FPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPSIKGGKKAEA 510 FPMHFLGLAGMPRRYADYPAQFTDFNMIASIG GFGL QVYFLF VVIPSIKGG AEA Sbjct: 445 FPMHFLGLAGMPRRYADYPAQFTDFNMIASIGGLGFGLMQVYFLFAVVIPSIKGGVPAEA 504 Query: 511 KPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 505 KPWDGAEGLEWTVPSPAPFHTFEVPPTVK 533 >gi|152980480|ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] Length = 667 Score = 399 bits (1024), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/518 (41%), Positives = 310/518 (59%), Gaps = 15/518 (2%) Query: 32 WRRWLLATNHKDIGTLYLWFSFTMLLSGGVLALLIRAE---LFQPGLQFFRPEFFNQLTT 88 WR W+ + +HK IG +Y+ ML+ G AL++RA+ F F P ++Q+ T Sbjct: 55 WRDWITSIDHKKIGIMYMILGLIMLMRGFADALMMRAQQAIAFGDNPGFLPPHHYDQIFT 114 Query: 89 MHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAALLLAGSFLVPG 148 HG++M+F MP G N+++PLQIGA D+AF +NNFSFW+ A+L+ S V G Sbjct: 115 AHGVIMIFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLVMASLFV-G 173 Query: 149 GATAAGWTLYAPLSTQMGP---GMDMGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLM 205 GW Y PLS + G+D I+++ I G +++ +N+IVTI+ MRAPGM +M Sbjct: 174 EFAKTGWLAYPPLSGILASPDVGVDYYIWSLQIAGVGTLLSGVNLIVTIVKMRAPGMDMM 233 Query: 206 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFG 265 KMP+F WT L T L++A PVL + M DR T+FF GG+ +MY ++ W +G Sbjct: 234 KMPVFTWTALCTNVLIVAAFPVLTAVLGMLTLDRVLDTNFFTNDLGGNAMMYVNLIWIWG 293 Query: 266 HPEVYIMILPAFGIVSQIIPAFARKPLFGYASMVYATASIAILSFIVWAHHMFTTGMPVT 325 HPEVYI+ILP FG+ S+++ F+ K LFGY SMVYAT I ILS++VW HH FT G + Sbjct: 294 HPEVYILILPLFGVFSEVVSTFSAKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGAS 353 Query: 326 AQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAV 385 FF TM+I++PTG KIFNW+ TM+RG + FE PM++++GF+ F +GG TG++LAV Sbjct: 354 VNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFELPMMWTIGFMITFVIGGMTGVLLAV 413 Query: 386 TPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLIT 445 P D + ++ +++AHFH V++ G LF LFAG YW PK G+ + + GK FW ++ Sbjct: 414 PPADFVLHNSLFLIAHFHNVIIGGVLFGLFAGINYWFPKAFGYKLDVFWGKCSFWFWIVG 473 Query: 446 FNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFG-----FGLSQVYFLFFVVIP 500 F + F P++ LGL G+ RR + + Q + + AFG G++ + F+V Sbjct: 474 FWMAFMPLYILGLMGVTRRMSQF--QDPSLQIWFQVAAFGAVLIALGIASMLIQFYVSFR 531 Query: 501 SIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVV 538 + PW+G LEW+ SP P + F P V Sbjct: 532 RRHELRDVTGDPWDG-RTLEWSTSSPPPDYNFAFTPKV 568 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.142 0.479 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,285,362 Number of extensions: 56117 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 3 Length of query: 539 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 451 Effective length of database: 895,685 Effective search space: 403953935 Effective search space used: 403953935 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 132 (55.5 bits)