BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4025.p
         (199 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980024|ref|YP_001354840.1| cytochrome c oxidase subunit XI...   278   2e-76

>gi|152980024|ref|YP_001354840.1| cytochrome c oxidase subunit XI
           assembly protein [Janthinobacterium sp. Marseille]
          Length = 199

 Score =  278 bits (710), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/181 (70%), Positives = 151/181 (83%)

Query: 9   QEQPERGLNRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATVEAPANSQ 68
           ++Q    LN  M  KLVV+AV+MFGFGY L+P+Y++ICE+TGVN LT ++  V+   NSQ
Sbjct: 6   EDQKHSKLNTQMFGKLVVIAVMMFGFGYLLVPIYKQICEITGVNILTSQEMKVKPIDNSQ 65

Query: 69  VDKSRVVTVEFDGNAQGPWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQAIPSYAP 128
           VDKSR +TVEFD N QGP+RFRPTV S+QVHPGEM Q+ YEVVNTQAR+V+AQAIPSYAP
Sbjct: 66  VDKSRTITVEFDANTQGPFRFRPTVNSMQVHPGEMAQIVYEVVNTQARSVEAQAIPSYAP 125

Query: 129 QQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGKDKA 188
           QQ+AA FKKVECFCF QQTL  +QAKQMPVVFY+DP LPKDV TITLSYTFFEI G++K 
Sbjct: 126 QQAAAHFKKVECFCFQQQTLEASQAKQMPVVFYLDPALPKDVKTITLSYTFFEIAGREKK 185

Query: 189 A 189
           A
Sbjct: 186 A 186


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 437,491
Number of extensions: 16498
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 120
Effective length of database: 928,958
Effective search space: 111474960
Effective search space used: 111474960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)