BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4023.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980101|ref|YP_001354839.1| cytochrome c oxidase subunit II...   436   e-124
gi|152980608|ref|YP_001354328.1| cytochrome o ubiquinol oxidase ...    74   1e-14

>gi|152980101|ref|YP_001354839.1| cytochrome c oxidase subunit III
           [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/286 (78%), Positives = 248/286 (86%)

Query: 1   MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVVWAPYVNILGILMVLVVLY 60
           MS+Q A AP+YFVPGPS+WP +AG S+L+ M+GAS WVN   W  Y    G+L  LVVLY
Sbjct: 1   MSAQHANAPYYFVPGPSKWPAIAGTSLLVMMLGASGWVNDAGWGAYATFAGLLGFLVVLY 60

Query: 61  YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120
           YWFGDAI ESE GLY++RID SYRWSMSWFIFSEVMFFAAFFGALFYARSI MPWL DLD
Sbjct: 61  YWFGDAIAESEGGLYNKRIDASYRWSMSWFIFSEVMFFAAFFGALFYARSIAMPWLGDLD 120

Query: 121 HKLLWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLSSGVTLTISHHAMRAGHRT 180
           +K+LWPDF   WGNVGPAGTVE FTTMGPF IPTINT LLL SGVTLTISHHA+R  HR 
Sbjct: 121 NKILWPDFAAHWGNVGPAGTVEPFTTMGPFWIPTINTALLLLSGVTLTISHHAIRENHRG 180

Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAI 240
           +TA WL  TILLGA+FMGFQ YEY+HAYSELNLKL+SG+YGSTFF+LTGFHGFHVT+GAI
Sbjct: 181 KTAFWLAATILLGAIFMGFQVYEYMHAYSELNLKLTSGVYGSTFFLLTGFHGFHVTLGAI 240

Query: 241 MLSVVLYRLLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286
           MLSVVLYR+L+GHFT  +HFAFEGAAWYWHFVDVVWLGLYVVVYWL
Sbjct: 241 MLSVVLYRVLKGHFTADNHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286


>gi|152980608|ref|YP_001354328.1| cytochrome o ubiquinol oxidase
           subunit III [Janthinobacterium sp. Marseille]
          Length = 210

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 136 GPAGTVENFTTMGPFPIPTINTLLLLSSGVTLTISHHAMRAGHRTQTAVWLFLTILLGAV 195
           GP G       +   P+   NT  LL S +T   +    +      T +WL +T LLGA 
Sbjct: 62  GPTGA-----ELFDLPLVAANTAFLLLSSITYGFAMLEAQRKRLKATMIWLAITGLLGAA 116

Query: 196 FMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRLLRGHFT 255
           F+  + YE+ H   E         + ++FF L   HG HVT G I L  ++++L R    
Sbjct: 117 FLALELYEFSHLIHE-GAGPQRSAFLTSFFALVATHGLHVTFGIIWLITLMFQLKRHGLI 175

Query: 256 PTHHFAFEGAAWYWHFVDVVWLGLYVVVY 284
           P +       + +WHF+DV+W+G++  VY
Sbjct: 176 PENGRRLMCLSMFWHFLDVIWIGVFTFVY 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 632,213
Number of extensions: 23294
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)