BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4021.p
         (239 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981734|ref|YP_001354837.1| hypothetical protein mma_3147 [...   258   2e-70

>gi|152981734|ref|YP_001354837.1| hypothetical protein mma_3147
           [Janthinobacterium sp. Marseille]
          Length = 237

 Score =  258 bits (660), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MPTRFVFRIIPFCATVIVAAAGIALGQWQTHRAEEKQALQQRLQMRASEAPLS-SLPAAD 59
           M   F FR+IPF A  I  A G++LGQWQT RA EK A++Q++  R + A L  S  A +
Sbjct: 1   MRFTFRFRLIPFVAAAIAVAIGLSLGQWQTRRAAEKIAIEQKIHERQAAASLQLSDSALN 60

Query: 60  AADVEFARIKLRGQFVPQWTLYLENRPYQGSVGFYVLTLFQPEGSAQAVMVARGWAPRDA 119
             D+EF R+ ++G+F+  W +YL+NRP+ G  GFY+L  F+  GS   ++VARGW PR+ 
Sbjct: 61  PDDIEFRRLSVKGEFLQDWPVYLDNRPHNGVAGFYLLMPFKVAGSQLHILVARGWIPRNV 120

Query: 120 LERTRVPQVAPPVGVVEVEGVLRRDAGHVLQLGQADAPRPQAILQNLDMPALAQASGVAL 179
            +RT++P +  P G +++EGV RRD GHV+QLG+ DAPRP AI+QNLD+   A ASG+ +
Sbjct: 121 ADRTKMPAIVTPNGQLQIEGVARRDIGHVMQLGEVDAPRPHAIVQNLDVAGFAAASGLQM 180

Query: 180 SPFVIEQGGAAGDTLVRDWPAPALGIDRHRGYAVQWYALAAMALIFFIVTGFKRG 234
           SP V+EQ    GD LVRDWP P+ G+D+HRGYA QWY LAAMA IFF+VTG +RG
Sbjct: 181 SPIVLEQLTDTGDGLVRDWPVPSSGVDKHRGYAFQWYGLAAMAFIFFVVTGIRRG 235


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 492,191
Number of extensions: 17357
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 158
Effective length of database: 921,564
Effective search space: 145607112
Effective search space used: 145607112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)