BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4020.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982287|ref|YP_001354836.1| hypothetical protein mma_3146 [...   281   2e-77

>gi|152982287|ref|YP_001354836.1| hypothetical protein mma_3146
           [Janthinobacterium sp. Marseille]
          Length = 194

 Score =  281 bits (719), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 155/187 (82%)

Query: 25  GRWKMLAVVAVCAAPLIASYLTYYVIKPQSRNNYGALIDPRQYPIPDLGSTAIDGAPAKL 84
           GRWK+ AV+ VCAAP+I SY TYYVIKPQSR NYG LIDPR YPIP LG+T +D  PA L
Sbjct: 8   GRWKLFAVILVCAAPIILSYFTYYVIKPQSRTNYGTLIDPRDYPIPALGATTLDKKPATL 67

Query: 85  QDYRGKWVMLQVDGGDCGETCQNKLLTMRQLRLMQGKEMERIERVWLVTDREPIATLLLR 144
           + Y+GKWVMLQV G +C  +C+ KL  MRQLRL QGKEM+RIERVWL+TD +P+ T+L+R
Sbjct: 68  ESYQGKWVMLQVSGAECEASCEKKLHDMRQLRLAQGKEMDRIERVWLITDDKPVDTILIR 127

Query: 145 EYDGTDILRVDAGKLQSWLPVDAGTSVQDHIYLIDPLGNLMMRFPKDPDPGKMKKDISKL 204
           E+DGTD+LRV    +++WLP DAG+S+ DHIY+IDPLG+LMMRFPKD DP K+KKD+ KL
Sbjct: 128 EFDGTDMLRVKEELVRAWLPTDAGSSITDHIYMIDPLGHLMMRFPKDADPNKVKKDLYKL 187

Query: 205 LRASSIG 211
           L+AS+IG
Sbjct: 188 LKASAIG 194


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 463,467
Number of extensions: 18427
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)