BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4019.p
         (378 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980031|ref|YP_001354835.1| cytochrome c oxidase subunit XV...   450   e-128

>gi|152980031|ref|YP_001354835.1| cytochrome c oxidase subunit XV
           assembly protein [Janthinobacterium sp. Marseille]
          Length = 384

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/358 (65%), Positives = 279/358 (77%), Gaps = 1/358 (0%)

Query: 1   MNATTLIQLGLTGLVVALIPLALVWRAQGVANKYRKLVWVTLFFTFDLIMFGAFTRLTDS 60
           +++ TL QLG  G+ VAL+   +VW ++   +KYRKLVWVTLF TFD+IMFGAFTRLTDS
Sbjct: 2   VDSGTLFQLGSKGIFVALLAFVIVWSSKD-PDKYRKLVWVTLFLTFDVIMFGAFTRLTDS 60

Query: 61  GLGCPDWPGCYSHANPLLAHEHINAAEEAMPFGPVTWAKAWIEMIHRYFAMAVGFLIIVL 120
           GLGCPDWPGCY HANPL A EHI AAE  MP GPVT  KAW+EMIHRY AM +G LII +
Sbjct: 61  GLGCPDWPGCYGHANPLQAMEHIRAAEALMPDGPVTVMKAWVEMIHRYLAMGIGVLIIAI 120

Query: 121 MVVAWRRWLKSGKTELQFRPWFPTALLGFVCLQGAFGAWTVTMKLQPIIVTTHLLLALTL 180
           +V++WR WL+SG+   +F P FP ALL FVC+QGAFGAWTVTMKLQP+IVT HLLL +TL
Sbjct: 121 VVISWRFWLQSGRAVHKFSPHFPVALLIFVCIQGAFGAWTVTMKLQPVIVTIHLLLGMTL 180

Query: 181 LAMLVWLAARQETHVPVSAAGRALIVPATCGAALLALQIALGGWVSTNYAALACSDFPLC 240
           L ML W+ ARQ+ H PV+AA  AL +PA     LL+ QIALGGWVSTNYAALACSDFPLC
Sbjct: 181 LGMLAWVGARQKEHPPVAAAAYALRIPALIALILLSFQIALGGWVSTNYAALACSDFPLC 240

Query: 241 NGKLVPDMDFQHGFTLWRHLGMTASGDYLPVEALTAIHWVHRSFAFVVILYVVWLAQRAL 300
           +G ++P MDF++GFTLWR LGMTA G+YLP  ALTAIHW HR FAFVV  Y+ W+  +A 
Sbjct: 241 HGAVIPQMDFENGFTLWRSLGMTADGEYLPFPALTAIHWTHRVFAFVVAGYIAWVCYKAY 300

Query: 301 HDEGLRKTARWLLTVLGLQLCTGLATIYLNWPLAIAVLHNGGAALLVILMVMLNYKVR 358
             EGL+  AR +L  L LQ+  G+AT+ L WPLA+AV HNG AALLV+L+VMLNYK R
Sbjct: 301 KIEGLQTIARGVLAALALQITIGIATVSLKWPLALAVAHNGCAALLVLLLVMLNYKAR 358


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.139    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 884,998
Number of extensions: 35009
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 293
Effective length of database: 906,776
Effective search space: 265685368
Effective search space used: 265685368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)