BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4018.p
         (297 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979776|ref|YP_001354834.1| protoheme IX farnesyltransferas...   509   e-146
gi|152980249|ref|YP_001352037.1| 4-hydroxybenzoate octaprenyltra...    64   9e-12

>gi|152979776|ref|YP_001354834.1| protoheme IX farnesyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 294

 Score =  509 bits (1312), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/294 (82%), Positives = 269/294 (91%)

Query: 1   MTTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGA 60
           MTTLTA PNRIAQYWALTKPRVTQLAVFCAVIGMFL+TPELP W  V+  T+GIWLLAGA
Sbjct: 1   MTTLTASPNRIAQYWALTKPRVTQLAVFCAVIGMFLATPELPSWKIVVAATIGIWLLAGA 60

Query: 61  AFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWL 120
           AFAINCLVEREIDSRMARTARRPMARGEITV QTLVFSG++GG GMWVLYN VNPLTMWL
Sbjct: 61  AFAINCLVEREIDSRMARTARRPMARGEITVPQTLVFSGLIGGAGMWVLYNFVNPLTMWL 120

Query: 121 TFATFVGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIW 180
           TFATFVGYA+IYTIILKPAT QNIVIGGL+GAMPPALGWAA+AND+PMQAW+LV+IIFIW
Sbjct: 121 TFATFVGYAVIYTIILKPATPQNIVIGGLSGAMPPALGWAAVANDLPMQAWILVLIIFIW 180

Query: 181 TPPHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLI 240
           TPPHFWALA+YRRD+YAKSGLPMLP+THG E T+ HI +YTIAL+A +MLPFA+GMSGLI
Sbjct: 181 TPPHFWALALYRRDEYAKSGLPMLPVTHGTEFTQFHIWLYTIALVATTMLPFAVGMSGLI 240

Query: 241 YLGAAVLLGAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLF 294
           YL +  +L  IF WY+WQ+YRHYTD+IARK FAYSIIYLS+LFA LLVDHY  F
Sbjct: 241 YLVSVAILDIIFVWYAWQVYRHYTDMIARKMFAYSIIYLSLLFAALLVDHYLRF 294


>gi|152980249|ref|YP_001352037.1| 4-hydroxybenzoate
           octaprenyltransferase [Janthinobacterium sp. Marseille]
          Length = 284

 Score = 64.3 bits (155), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 14/265 (5%)

Query: 9   NRIAQYWALT---KPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGAAFAIN 65
           NR+  Y+ L    KP    L ++  +  +++++   PDW  V   TLG  L+  A  A+N
Sbjct: 2   NRLQLYFRLIRLHKPIGILLLLWPTLWALWMASDGKPDWTLVAIFTLGTVLMRSAGCAVN 61

Query: 66  CLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATF 125
              +R+ D  + RT  RP+  G+I   + L+ + VL  L   +++ L N LT  L+ A  
Sbjct: 62  DYADRDFDKHVQRTVDRPITSGKIKPYEALLVALVLTLLAFALIWPL-NTLTKQLSIAAV 120

Query: 126 VGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHF 185
           +  A         A  Q  +  G+A      +G+AA+ N VP  AW L++    W+  + 
Sbjct: 121 IIAATYPYFKRFFAIPQAYL--GIAFGFGIPMGFAAVQNTVPAAAWWLLVANVFWSVAYD 178

Query: 186 WALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYLGAA 245
              AM  R+D  K G+    IT G     + +  Y + L  + ++ +  G+   I+  A 
Sbjct: 179 TEYAMVDREDDLKLGMKTSAITFGRYDVAIIMFCYAMTLGIIGIVGWQFGLR--IWFVAG 236

Query: 246 VLLGAIFFWYSWQIYRHYTDLIARK 270
           +LL A+   Y      HYT + +R+
Sbjct: 237 LLLAAVCAAY------HYTLIRSRE 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 653,171
Number of extensions: 24749
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 214
Effective length of database: 914,170
Effective search space: 195632380
Effective search space used: 195632380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)