BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4017.p
         (196 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981459|ref|YP_001354833.1| SenC family protein [Janthinoba...   304   3e-84

>gi|152981459|ref|YP_001354833.1| SenC family protein
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  304 bits (778), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 144/194 (74%), Positives = 163/194 (84%)

Query: 3   RFLSALLLAACATLLAACGQSKPELKFNNTDVTGLDYAKDFALTDHNGQPRTLADFKGKV 62
           RF S L++ A    L AC     ++ FNNTD+TGL YAK+F+L DHNG+ RTLADFKGK 
Sbjct: 2   RFRSLLVICAALFALTACSDKAKQVAFNNTDLTGLGYAKEFSLHDHNGKLRTLADFKGKA 61

Query: 63  VVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADRVQVLFVTVDPERDTQQVLAQYVPAFD 122
           VV+FFG+TQCPDVCPTTM+EMSNVMK LGPDADRVQVLFVTVDPERDT  +LAQYVPAFD
Sbjct: 62  VVVFFGFTQCPDVCPTTMMEMSNVMKALGPDADRVQVLFVTVDPERDTAALLAQYVPAFD 121

Query: 123 KRFLGLRGDLQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGHIRLFVKHGQ 182
            RFLGLRGDL +TEKVAKEFKVFYQKVPGK PGSYT+DHTAGSYVFDPQG IRLF++HGQ
Sbjct: 122 PRFLGLRGDLAETEKVAKEFKVFYQKVPGKTPGSYTVDHTAGSYVFDPQGRIRLFIRHGQ 181

Query: 183 GPQTLAHDIKLLLS 196
           G   +  D+K LL+
Sbjct: 182 GIDPIVQDLKTLLA 195


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 428,062
Number of extensions: 16363
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 118
Effective length of database: 932,655
Effective search space: 110053290
Effective search space used: 110053290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)