BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4013.p (230 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 341 2e-95 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 142 2e-35 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 139 1e-34 gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 135 2e-33 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 132 1e-32 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 341 bits (875), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/218 (77%), Positives = 188/218 (86%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIEF +VSK+Y + V AL DI+LSV KGEL+FLAGPSGAGKSTLLK+IAA+ERP+ G + Sbjct: 1 MIEFHQVSKKYTQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVI 60 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARA 120 VSG DI +K SGLPYLRRNLGLIFQQQ+LL DR++LANVMLPLIV G+SRPDAE+RARA Sbjct: 61 VSGHDISRIKTSGLPYLRRNLGLIFQQQRLLADRSVLANVMLPLIVCGASRPDAERRARA 120 Query: 121 ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 ALDKV LL A PL LSGGEQQRVAIARAIVNRPQIILADEPTANLDRA ANKVL AL Sbjct: 121 ALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLDAL 180 Query: 181 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGW 218 K+FH VGVTCLISTHDEQFL A R+IYLD GRI++ W Sbjct: 181 KAFHSVGVTCLISTHDEQFLDTATRVIYLDHGRIIESW 218 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 6/212 (2%) Query: 10 QYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLTVSGTDIVGL 69 Q V L+D+ L + KGE + + G SG+GKSTLL ++ ++ P++G +T+ D L Sbjct: 17 QGKYSVNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLNQDFATL 76 Query: 70 KASGLPYLR-RNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARAALDKVDLL 128 LR ++LG ++Q LL + + L NV +PL++ R +A ++ARA L +V L Sbjct: 77 DEKKRGDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEAHEKARAILARVGLE 136 Query: 129 GKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLA-ALKSFHGVG 187 + P ELSGGE+QRVA+ARA+V +P +LADEPT NLDR A+K L+ +G Sbjct: 137 HRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAHKTFDLMLELSRTLG 196 Query: 188 VTCLISTHDEQFLTGADRIIYLDRGRIVDGWH 219 +I THD + T DRI+ L DG H Sbjct: 197 TAFIIVTHDVELATHCDRIMRLSD----DGLH 224 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 126/218 (57%), Gaps = 4/218 (1%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIE +VSK Y L D T V KG+++ + GPSG+GKSTL+K + +E GK+T Sbjct: 1 MIELDKVSKWYGN-FQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKIT 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLI-VTGSSRPDAEKRAR 119 V G VG + L LR +G++FQ +L ++ N+ L + V S PDA +R Sbjct: 60 VDGIS-VGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGL 118 Query: 120 AALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAA 179 LD+V L+ P +LSGG+QQRVAIARA+ P +L DEPT+ LD N+VL Sbjct: 119 KYLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDV 178 Query: 180 LKSFHGVGVTCLISTHDEQFLTG-ADRIIYLDRGRIVD 216 + G+T ++ TH+ F A+R+I++D+G IV+ Sbjct: 179 MVGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVE 216 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 4/219 (1%) Query: 1 MIEFTRVSKQYAR---EVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSG 57 +IE V+K Y EV L I L + +GE + + G SG+GKSTL+ ++ ++RPT+G Sbjct: 18 LIELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTG 77 Query: 58 KLTVSGTDIVGLKASGLPYLRRN-LGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEK 116 G D+ G L LRR+ G +FQ L+ + + NV +P + +G + Sbjct: 78 SYHFMGRDVSGFDRDELAMLRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAERHA 137 Query: 117 RARAALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKV 176 RA+A L ++ L ++ P +LSGG+QQRV+I+RA++N +IILADEPT LD + V Sbjct: 138 RAQALLAELGLAERSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDV 197 Query: 177 LAALKSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIV 215 + L G T L+ TH ++ A R+I + G I+ Sbjct: 198 MKLLADLSARGHTVLLITHAKEVADHAQRLIEIKDGHIL 236 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 11/224 (4%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MI+ VS +Y + YALR +L + KG+ L G SGAGKSTLL+ I + +P++G + Sbjct: 1 MIQLNDVSVRYG-DTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTID 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLI----VTGSSRPDAEK 116 V G ++ + L RR G++FQQ +L+ R L NV++ + S P +++ Sbjct: 60 VVGLGLLQNRRV-LQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQE 118 Query: 117 RARA---ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANA 173 R ALD+V LL KA+ +LSGG+QQRV IARA+ +P++ILADEP A+LD A + Sbjct: 119 EQRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATS 178 Query: 174 NKVLAALKSF-HGVGVTCLISTHDEQF-LTGADRIIYLDRGRIV 215 KVL L+ G++ ++S H L +DRI+ L G+++ Sbjct: 179 EKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVM 222 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 525,152 Number of extensions: 21858 Number of successful extensions: 287 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 71 Length of query: 230 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 150 Effective length of database: 925,261 Effective search space: 138789150 Effective search space used: 138789150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)