BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4012.p
         (308 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980422|ref|YP_001354829.1| signal recognition particle rec...   519   e-149
gi|152980389|ref|YP_001354675.1| signal recognition particle, su...   121   5e-29
gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulato...    59   3e-10

>gi|152980422|ref|YP_001354829.1| signal recognition particle
           receptor [Janthinobacterium sp. Marseille]
          Length = 419

 Score =  519 bits (1337), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/307 (82%), Positives = 287/307 (93%), Gaps = 1/307 (0%)

Query: 1   VAAPEPAPEAKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSDAGVEAT 60
           V A  PA E K+SW++RLK GLSKTS+NLTTLFVGA+ID+DLYEELESALL+SDAGV+AT
Sbjct: 113 VPAVTPA-EQKQSWMARLKVGLSKTSTNLTTLFVGAKIDDDLYEELESALLMSDAGVDAT 171

Query: 61  QWLLAELKKKVKNERLTEAAQVRTALRTLLIDLLQPLQRPLVLDRAKPLVMMIAGVNGAG 120
           Q+LL  LK+KVKNE+LTEAAQV+TALR+LL+++L PLQ+PLVL + +PLVMMI GVNGAG
Sbjct: 172 QFLLDALKRKVKNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLGQHQPLVMMITGVNGAG 231

Query: 121 KTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAVAYD 180
           KTTTIGKLA HLQAH QSVLLAAGDTFRAAAREQL VWG+RNNV VIAQESGDPAAVA+D
Sbjct: 232 KTTTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTVWGQRNNVTVIAQESGDPAAVAFD 291

Query: 181 SVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMSSAPHEVLLVIDGNTGQN 240
           +VHSAQARGT+VVMVDTAGRLPTQLHLM+ELKK+KRV+AK M+SAPHE+LL+IDGNTGQN
Sbjct: 292 AVHSAQARGTNVVMVDTAGRLPTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQN 351

Query: 241 ALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNAT 300
           AL QVKAFDDALGLTGLVVTKLDGTAKGG+LAAIA+ RP+P+YFIGVGE+IEDLQPFNA 
Sbjct: 352 ALTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQ 411

Query: 301 EFVDALL 307
           EFV+ALL
Sbjct: 412 EFVEALL 418


>gi|152980389|ref|YP_001354675.1| signal recognition particle,
           subunit SRP54 [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  121 bits (304), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 141/277 (50%), Gaps = 16/277 (5%)

Query: 41  DLYEELESALLVSDAGVEATQWLLAELKKKVKNERLTEA--------AQVRTALRTLLID 92
           ++  E+  ALL +D  + A +  ++ +K+K   E +  +          V+  L  ++  
Sbjct: 29  EMLREVRLALLEADVALPAVREFISRVKEKAMGEDVVGSLTPGQALVGVVQRELAAIMGA 88

Query: 93  LLQPLQRPLVLDRAKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQS-VLLAAGDTFRAAA 151
            L P    L      P ++++AG+ GAGKTTT+GKLA +L+   +  VL  + D +R AA
Sbjct: 89  DLGPEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLTVSADVYRPAA 148

Query: 152 REQLAVWGERNNVQVIAQESGD-PAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDE 210
             QL     +        ++ D P  +A  ++  A+     V+++DTAGRL     +M E
Sbjct: 149 IGQLETVTAQVGADFFPSQATDKPVDIALAALDYAKRHYHDVLIIDTAGRLGIDEAMMHE 208

Query: 211 LKKIKRVIAKAMSSAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGI 270
           +K +   +       P E L V+D   GQ+A+   KAF DAL LTG+V+TKLDG ++GG 
Sbjct: 209 IKALHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRGGA 262

Query: 271 LAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALL 307
             ++      P+ F GV EK++ L+ F+     D +L
Sbjct: 263 ALSVRHITGKPIKFAGVAEKLDGLEAFDPARMADRIL 299


>gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulator
           FlhF [Janthinobacterium sp. Marseille]
          Length = 421

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 110 VMMIAGVNGAGKTTTIGKLALH-LQAHGQSVL-LAAGDTFRAAAREQLAVWGERNNVQVI 167
           V  + G  G GKTTT  KLA   +  HG S L L   D +R    EQL ++G+   V V 
Sbjct: 194 VYALVGPTGVGKTTTTAKLAARCVMRHGPSKLALITTDGYRIGGYEQLRIYGKILGVMVH 253

Query: 168 AQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMSSAPH 227
           + +      +A D +     +G H V++DT G       + D++          ++ A  
Sbjct: 254 SVKDEADLRIALDEL-----KGKHTVLIDTVGVSQRDQMVADQIA--------MLTGAGD 300

Query: 228 EV--LLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFI 285
           +V  LL ++  +    L +V       GL G ++TKLD  A  G    +   + + LY++
Sbjct: 301 QVKRLLCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEAATIGSALDVVIRQKLNLYYV 360

Query: 286 GVGEKI-EDLQPFNATEFVD 304
             G+++ EDL   N    VD
Sbjct: 361 ANGQRVPEDLHVANQQYLVD 380


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 711,714
Number of extensions: 29274
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 225
Effective length of database: 914,170
Effective search space: 205688250
Effective search space used: 205688250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)