BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4004.p (372 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 365 e-102 gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [... 114 7e-27 gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 114 8e-27 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 114 1e-26 gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [... 111 6e-26 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/356 (54%), Positives = 257/356 (72%), Gaps = 6/356 (1%) Query: 17 LRSELQDLLQQAHINQSIIERHQAFDLKLIGASQFRELIEVMLTVMPGVFSLETVTLSLI 76 +R++L+ LL+QAH NQ I++R+Q FDLK IGA+ F+ELI+ + + L+ +TLSLI Sbjct: 1 MRTQLKLLLEQAHRNQQIMQRYQEFDLKFIGANSFQELIDSVFDTLTEASELDVITLSLI 60 Query: 77 DHDHGIQHILRDLQIGVNEFPKLLFLKDPLHFIDDEDALESEKPRLGEYVSALHGPLFPH 136 D I+ IL DL+I ++++P LLF++D E A + KP LG Y + H LFP Sbjct: 61 DPAAEIRRILSDLRIDISDYPNLLFVEDKDGV--GEIAHPARKPALGPYNTMQHKRLFPD 118 Query: 137 --YEPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRTLATDFIERLATVAAICLENVINNE 194 +P SVA+LPL+R++ L+G+LSLGS RFT +A+DF++ A++ AIC+ENVINNE Sbjct: 119 TVLKPASVAILPLIRRNTLIGWLSLGSLDPTRFTANMASDFLQHRASIVAICVENVINNE 178 Query: 195 RLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSG 254 RL+HIGLTDPLTGVNNRRY+E+R+ EEV R+QR ALS ++ID+DHFK+VND FGHQ G Sbjct: 179 RLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQGG 238 Query: 255 DDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMIE 314 D+VL EVA RIK ELRLSDALGR+GGEEFVVLL A D A+ +AERIRA + R +++ Sbjct: 239 DEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIVL- 297 Query: 315 GSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRVVQAA 370 S + L+ T SIG ASL+ DR A V Q +L AD ALYQAK+ GRN+V+ A+ Sbjct: 298 SSGEELRATVSIGVASLNTADRQDSAA-VAQQLLAKADLALYQAKKEGRNKVISAS 352 >gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [Janthinobacterium sp. Marseille] Length = 934 Score = 114 bits (286), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 14/175 (8%) Query: 195 RLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSG 254 +L H DPLTG+ NRR E+R+ + + L++D+D FK VND GH +G Sbjct: 501 QLSHQAAHDPLTGLFNRREFERRLEVAIDTLALQSKQHALLYLDLDQFKIVNDTCGHSAG 560 Query: 255 DDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMIE 314 D++LR++ A ++ +R SD L R GG+EF L + T D AVRIAE++R IC + + Sbjct: 561 DELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCTPDSAVRIAEKLRQTICDFHFVWQ 620 Query: 315 GSRDPLKIT---ASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRV 366 P+ ++ + + +LS PD +L AAD A Y AK+ GRNRV Sbjct: 621 DKIFPIGVSIGLVNFNSDALSLPD-----------LLSAADAACYVAKDTGRNRV 664 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 114 bits (286), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 9/173 (5%) Query: 196 LKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGD 255 L + L DPLT + NRR + QR+ E +AR+ R L+ LF+D+D FK VND +GH++GD Sbjct: 553 LMGMALKDPLTDLPNRRALIQRLPESIARAARLGKPLAVLFLDLDGFKGVNDGYGHEAGD 612 Query: 256 DVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRD-DAVRIAERIRAGICSRGVMIE 314 ++LR +A R+ +R +D + R G+EFV++L D DA+ +A++I + + Sbjct: 613 ELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDAMDVADKILHTLQQPFTLTA 672 Query: 315 GSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRVV 367 + + I+ASIG A P D P + ++ AD A+Y AK+ G+NR V Sbjct: 673 AT---VTISASIGIAMHWPEDHTTP-----EQLITLADGAMYAAKKKGKNRAV 717 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 11/173 (6%) Query: 194 ERLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQS 253 ERL + D LTG NRRY + A E A+ +R LS + DID FK++ND +GH + Sbjct: 442 ERLSRV---DALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQINDNYGHAA 498 Query: 254 GDDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMI 313 GD+V++ A + +R D + R GGEEF +LL +T + A AER+R + + V Sbjct: 499 GDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQVSY 558 Query: 314 EGSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRV 366 +G L TAS G A L D+ +A+L+ AD+ +Y+AK GRNRV Sbjct: 559 QGKL--LAFTASFGVAQLKDSDQS------FEALLQRADEMMYRAKNLGRNRV 603 >gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] Length = 283 Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 104/169 (61%), Gaps = 12/169 (7%) Query: 203 DPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVA 262 D LTG+ NR + +++++A +R+++ LS L+ID+D FK VND+ GH++GD +LR VA Sbjct: 122 DVLTGLANRALFHEIVSQQLALCERNKTVLSILYIDLDGFKAVNDKHGHEAGDKLLRAVA 181 Query: 263 ARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMIEGSRDPLK- 321 +R+K R SD + R GG+EF +++ A ++A +AE++ I + V+ D L Sbjct: 182 SRLKTNSRHSDVVARLGGDEFAMVMVGAHMENARFVAEKMVEAISAPYVL----DDTLTS 237 Query: 322 -ITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRVVQA 369 I+ASIG A+ P+ G +A+L AD A+Y+AK GR RV A Sbjct: 238 HISASIGVATY--PESG----TTSEALLHRADGAMYKAKNLGRRRVALA 280 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 815,749 Number of extensions: 33378 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 30 Length of query: 372 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 287 Effective length of database: 906,776 Effective search space: 260244712 Effective search space used: 260244712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)