BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4002.p
         (262 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinoba...   193   9e-51
gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase [Janthinoba...   100   2e-22
gi|152979927|ref|YP_001355051.1| enoyl(3-hydroxyisobutyryl)-coen...    60   1e-10

>gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  193 bits (491), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 114/260 (43%), Positives = 161/260 (61%), Gaps = 10/260 (3%)

Query: 5   LPHDDILVARHGEQVLHLTLNRPAVRNALRNQSLQEIVQELARAEQDDSVRVVVISGNDQ 64
           + +++ILV  HG +V  +TLNRPA  NAL ++ + E+   L   + DD +  ++I+G+++
Sbjct: 1   MQYENILVEIHG-KVGVITLNRPAALNALNDKLMDELGLALQSFDGDDDIGCMIITGSEK 59

Query: 65  AFAAGADLNEMIHKDAIATQLDV-RAQY----WRAIARFPKPLLAAVNGYALGAGCELLM 119
           AFAAGAD+  M    A  T +DV +  Y    W  I    KP++AAV GYALG GCEL M
Sbjct: 60  AFAAGADIGAM----ATYTYMDVYKGDYITRNWEQIRSVRKPVIAAVAGYALGGGCELAM 115

Query: 120 HADIAIAGRSARIGQPEINVGTLPGAGGTQRLIRTVGKPLAMKMVLSGEFITAEQALQAG 179
             D  IA  +A+ GQPEI +G +PGAGGTQRL R V K  AM + L+   + A +A +AG
Sbjct: 116 MCDFIIAADTAKFGQPEIKLGIIPGAGGTQRLPRAVSKSKAMDLCLTARMMDAAEAERAG 175

Query: 180 LVAEVVEDEATLERSLALATRIAQKSPLAVRLAKEAMLQSFELGLEAGLLLERKSFSLMA 239
           LV+ VV  +   E +LA AT IA  S   V + KE++ +++E  L  G+  ER+ F    
Sbjct: 176 LVSRVVAADKLHEEALAAATVIANMSLPMVMMVKESINRAYETTLAEGVQFERRLFHSTF 235

Query: 240 ASADRQEGIAAFQEKRAAVF 259
           A+AD++EG+ AF EKRAA F
Sbjct: 236 ATADQKEGMQAFIEKRAAHF 255


>gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 6/252 (2%)

Query: 9   DILVARHGEQVLHLTLNRPAVRNALRNQSLQEIVQELARAEQDDSVRVVVISGNDQAFAA 68
           +I  +RH E  L LT++ P  +NAL        V+ L+ AE+DDS+R V+++G D  F A
Sbjct: 14  EIQASRH-EATLILTISNPGAKNALHPDMFAAAVEVLSTAERDDSIRAVILTGADNFFCA 72

Query: 69  GADLNEMIHKDAI-----ATQLDVRAQYWRAIARFPKPLLAAVNGYALGAGCELLMHADI 123
           G +LN+++   AI        +D    +  AI   PKP++AAV G A GAG  L +  D+
Sbjct: 73  GGNLNKLLEHRAIDKSQQGDAVDSLRSWIEAIRDCPKPVIAAVEGAAAGAGFSLALACDL 132

Query: 124 AIAGRSARIGQPEINVGTLPGAGGTQRLIRTVGKPLAMKMVLSGEFITAEQALQAGLVAE 183
            +AG +++       VG  P  G +  L + + + LA +++L G+ + A +  + GL+  
Sbjct: 133 IVAGNNSKFAMSYSRVGLTPDGGASWFLTQALPRQLATEILLEGKAVAATRLHELGLINR 192

Query: 184 VVEDEATLERSLALATRIAQKSPLAVRLAKEAMLQSFELGLEAGLLLERKSFSLMAASAD 243
           +V D  TL+ +   A  +A+ S  AV   K  + +     L      E+  F       D
Sbjct: 193 LVADGTTLDAAQQWADELAELSGHAVERIKSLVREGGSNTLAQHFESEKFHFVESLNHRD 252

Query: 244 RQEGIAAFQEKR 255
             EGI AF EKR
Sbjct: 253 ALEGINAFLEKR 264


>gi|152979927|ref|YP_001355051.1|
           enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase protein
           [Janthinobacterium sp. Marseille]
          Length = 374

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 22  LTLNRPAVRNALRNQSLQEIVQELARAEQDDSVRVVVISGN-DQAFAAGADLNEMIHKDA 80
           LTLNRP   N+L    ++ + ++L   + D +VR V+I  +  +AF AG D+    H+ A
Sbjct: 27  LTLNRPEAMNSLSLPMVRTLAEKLGAWQHDPAVRAVLIDSSLPKAFCAGGDIR-FFHEVA 85

Query: 81  -------IATQLDVRAQYW---RAIARFPKPLLAAVNGYALGAGCELLMH---ADIAIAG 127
                   A   D   + +     I  +PKP +A ++G  +G G  +      A I +  
Sbjct: 86  QGGLTGGSALLEDFFTEEYALNHLIHHYPKPYIALMDGIVMGGGMGIAQSSAAASIRVVT 145

Query: 128 RSARIGQPEINVGTLPGAGGTQRLIRTVGKPLAMKMVLSGEFITAEQALQAGL 180
              R+  PE+N+G  P  GG   L R  G+ L   + LSGE + A  AL A L
Sbjct: 146 ERTRMAMPEVNIGLFPDVGGGYFLSRLPGE-LGTYLGLSGEIVGAADALYANL 197


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 534,065
Number of extensions: 20500
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 4
Length of query: 262
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 181
Effective length of database: 921,564
Effective search space: 166803084
Effective search space used: 166803084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)