BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3998.p
         (512 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase...   110   2e-25

>gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase protein [Janthinobacterium sp. Marseille]
          Length = 795

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 145/295 (49%), Gaps = 28/295 (9%)

Query: 16  VAVIGSGTMGAGIAQVAAVAGHPVLLYD------SREGAATKAIGDIRT-SLDKLANKEK 68
           VAV+G+G MGA IA     A  PV+L+D      ++ G   +AI +++  S   LAN + 
Sbjct: 9   VAVLGAGVMGAQIAAHCINAKVPVILFDLPAKDGNKNGIVLRAIENLKKLSPAPLANVD- 67

Query: 69  ISAEVAQAASERLRVASSLQELRGARLVVEAIVEQLAAKQELFGKMEALVDAQCILASNT 128
            +A++  A  E       L +L+   L++EAI E++  K +L+ K+   + A  I ASNT
Sbjct: 68  YAAQIEVANYE-----DDLAKLKDCDLIIEAIAERMDWKHDLYKKVAPHIGANTIFASNT 122

Query: 129 SSLSITHI--GATLRHPERLVGMHFFNPVPQMALVEIIRGLASDATVA-QCVYDTAQAWG 185
           S LSIT +  G       R  G+HFFNP   M LVE+I  +A+   +  Q         G
Sbjct: 123 SGLSITALSEGFAADLKARFCGVHFFNPPRYMHLVELIPTVATKPEILDQLEGFLTSTLG 182

Query: 186 KLPVFASSTPGFIVNRLARPYYAEGLRVLHERGAQPATIDAIMRESGG----FRMGPFEL 241
           K  V A  TP FI NR+        L  +HE      T+D +   +G      + G F  
Sbjct: 183 KGVVRAFDTPNFIANRVG---IFGMLATMHEAEKFGLTVDVVDDLTGSKLGRAKSGTFRT 239

Query: 242 MDLIGHDVNFAVTQSVFQAYFNDPRF----TPSLIQQELVHAGYLGRKSGRGFYR 292
            D++G D    V  ++     +DP F    TP ++ + L+  G LG+K+G GFY+
Sbjct: 240 ADVVGLDTMAHVITTMQNTLQDDPFFPLYKTPEVLTK-LIGGGALGQKAGAGFYK 293


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,118,130
Number of extensions: 44773
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 425
Effective length of database: 899,382
Effective search space: 382237350
Effective search space used: 382237350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)