BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3997.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinoba...   141   5e-35
gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase [Janthinoba...   114   5e-27
gi|152979927|ref|YP_001355051.1| enoyl(3-hydroxyisobutyryl)-coen...    60   2e-10

>gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  141 bits (355), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 1   MSAPSILFENQDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGAGRG 60
           M   +IL E    V VITLNRP  LN+    +  EL  A+     D  +  +++TG+ + 
Sbjct: 1   MQYENILVEIHGKVGVITLNRPAALNALNDKLMDELGLALQSFDGDDDIGCMIITGSEKA 60

Query: 61  FCAGQDLGDRAVTPGDEAVDLGHSIDQYYGPLV----KSLRALPFPVICAVNGVAAGAGA 116
           F AG D+G  A             +D Y G  +    + +R++  PVI AV G A G G 
Sbjct: 61  FAAGADIGAMATYT---------YMDVYKGDYITRNWEQIRSVRKPVIAAVAGYALGGGC 111

Query: 117 NLPLACDIVLAARSASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQA 176
            L + CD ++AA +A F +   KLG+IP  GGT  LPR V  ++AM + L    + A +A
Sbjct: 112 ELAMMCDFIIAADTAKFGQPEIKLGIIPGAGGTQRLPRAVSKSKAMDLCLTARMMDAAEA 171

Query: 177 EQWGLIWKCIDDDQLMPQARAMAAQFAKAPTRGLAATKATLYASPANTLAQQLDLERDTM 236
           E+ GL+ + +  D+L  +A A A   A      +   K ++  +   TLA+ +  ER   
Sbjct: 172 ERAGLVSRVVAADKLHEEALAAATVIANMSLPMVMMVKESINRAYETTLAEGVQFERRLF 231

Query: 237 RELGHSRDYREGVSAFLEKRAPHF 260
                + D +EG+ AF+EKRA HF
Sbjct: 232 HSTFATADQKEGMQAFIEKRAAHF 255


>gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  114 bits (285), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 1/250 (0%)

Query: 11  QDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGAGRGFCAGQDLGDR 70
            +   ++T++ P   N+    M     E ++  + D  +R ++LTGA   FCAG +L   
Sbjct: 20  HEATLILTISNPGAKNALHPDMFAAAVEVLSTAERDDSIRAVILTGADNFFCAGGNLNKL 79

Query: 71  AVTPGDEAVDLGHSIDQYYGPLVKSLRALPFPVICAVNGVAAGAGANLPLACDIVLAARS 130
                 +    G ++D      ++++R  P PVI AV G AAGAG +L LACD+++A  +
Sbjct: 80  LEHRAIDKSQQGDAVDSLRS-WIEAIRDCPKPVIAAVEGAAAGAGFSLALACDLIVAGNN 138

Query: 131 ASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQAEQWGLIWKCIDDDQ 190
           + F   + ++GL PD G ++FL + +    A  + L G+ ++A +  + GLI + + D  
Sbjct: 139 SKFAMSYSRVGLTPDGGASWFLTQALPRQLATEILLEGKAVAATRLHELGLINRLVADGT 198

Query: 191 LMPQARAMAAQFAKAPTRGLAATKATLYASPANTLAQQLDLERDTMRELGHSRDYREGVS 250
            +  A+  A + A+     +   K+ +    +NTLAQ  + E+    E  + RD  EG++
Sbjct: 199 TLDAAQQWADELAELSGHAVERIKSLVREGGSNTLAQHFESEKFHFVESLNHRDALEGIN 258

Query: 251 AFLEKRAPHF 260
           AFLEKR PH+
Sbjct: 259 AFLEKRKPHY 268


>gi|152979927|ref|YP_001355051.1|
           enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase protein
           [Janthinobacterium sp. Marseille]
          Length = 374

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 11  QDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGA-GRGFCAGQDL-- 67
           ++G+A +TLNRP+ +NS ++ M   L E +   Q DP VR +L+  +  + FCAG D+  
Sbjct: 21  ENGLARLTLNRPEAMNSLSLPMVRTLAEKLGAWQHDPAVRAVLIDSSLPKAFCAGGDIRF 80

Query: 68  ----GDRAVTPGD--------EAVDLGHSIDQYYGPLVKSLRALPFPVICAVNGVAAGAG 115
                   +T G         E   L H I  Y  P +  +  +       +   +A A 
Sbjct: 81  FHEVAQGGLTGGSALLEDFFTEEYALNHLIHHYPKPYIALMDGIVMGGGMGIAQSSAAA- 139

Query: 116 ANLPLACDIVLAARSASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQ 175
                +  +V      +  EV   +GL PD GG YFL RL G      + L GE + A  
Sbjct: 140 -----SIRVVTERTRMAMPEV--NIGLFPDVGGGYFLSRLPGEL-GTYLGLSGEIVGAAD 191

Query: 176 A 176
           A
Sbjct: 192 A 192


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 585,391
Number of extensions: 22450
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)