BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3996.p (356 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 81 1e-16 gi|152981393|ref|YP_001352305.1| dihydropteridine reductase [Jan... 79 4e-16 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 75 5e-15 gi|152981474|ref|YP_001352374.1| CDP-6-deoxy-delta-3,4-glucoseen... 60 2e-10 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 45/326 (13%) Query: 35 AYQQGQHLTLRSHI-NGEELRRSYSICSARQDRQ----LRVAIKRVPGGLFSNWANESFV 89 AY G H+ ++ + G+ RSYS+ + R+A++R G + Sbjct: 41 AYTAGAHIRVQVILPGGDADERSYSLIDDSVGSECRSYYRIAVQREAKGKGGSAFMHGLE 100 Query: 90 PGQSIEAMPPMGQFNVPLDAANRKHYLAFAAGSGITPMLSIIKTTLLAEPHSQFTLVYAN 149 G + PP F PLDA+ R H + A G GITP+L++ L F Y Sbjct: 101 VGSHLSIRPPKNDF--PLDASAR-HNVLIAGGIGITPILAMAYA--LQAGGRSFEFHYGT 155 Query: 150 RASSSVIFKEELSDLKDAYLERFNVVYVMSREQQDVELFNGRIDR--AKCDAFFASWIKL 207 R+ + F++ + ++A L F+G R + +A A Sbjct: 156 RSPDLMAFRDVVETFRNAAL-----------------YFDGGDPRRGLQLEALLAHPANG 198 Query: 208 QDIDTAFLCGPQEMVQAVADSLQAHGMSKAQIKTELFSAGTSAREHAARPVVGKTECEVT 267 + + ++CGP+ ++ AV + + +G + + ELF++ + G T EV Sbjct: 199 KHV---YVCGPRGLIDAVIATAKHYGWADDHVHFELFNSPAAQG--------GDTAFEVE 247 Query: 268 VIVDGYHNVFTMDKERESVLDAGLKHGIDLRYSCKGGVCATCRCKVVEGKVDMDANYALE 327 + G +DK S+LD L G DL Y CK G C C V+EG D +Y L Sbjct: 248 LRASGKTLQVPVDK---SILDVILAAGCDLMYDCKRGECGMCATAVLEGIPD-HRDYNLP 303 Query: 328 DYEIARGFVLS-CQSFPVSDKLLLDF 352 + E A G V+ C S S +L+LD Sbjct: 304 EDERAAGKVMCICVSRAKSARLVLDI 329 >gi|152981393|ref|YP_001352305.1| dihydropteridine reductase [Janthinobacterium sp. Marseille] Length = 400 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 24/253 (9%) Query: 4 FYPLTISGVKQETRDTIVVSFAL-PAELQDTFAYQQGQHLTLRSHI-NGEELRRSYSICS 61 + + ++ V+QE+ V SF L P + + A+Q GQ++++ H+ NG R YS+ Sbjct: 151 LFEMKVTAVEQESEQ--VKSFTLVPQDGSSSPAFQPGQYVSVAVHLPNGLRQLRQYSLSD 208 Query: 62 ARQDRQLRVAIKR------VPGGLFSNWANESFVPGQSIEAMPPMGQFNVPLDAANRKHY 115 A R LR+++KR P G+ SNW +++ G + P G F D Sbjct: 209 APDHRHLRISVKREVAGKETPAGMVSNWLHDNVQAGGVLSVSKPFGDFTPDTDGDGA--I 266 Query: 116 LAFAAGSGITPMLSIIKTTLLAEPHSQFTLVYANRASSSVIFKEELSDLKDAYLERFNVV 175 + +AG GITPM+S + P + +A R + +D+ A N+ Sbjct: 267 VLLSAGVGITPMISALNRIAYVAPQRRVIFAHAARNAK---HHPHRADIAKAAALMPNLQ 323 Query: 176 YVMSREQQDVELFNGRIDRAKCDAFFASWIKLQDIDTA----FLCGPQEMVQAVADSLQA 231 V E++D NG + KL D A ++CGP +QA L A Sbjct: 324 SVTFYEEEDAVQENGAAVPGRMQ-----LKKLPQWDVANTKVYMCGPLPFMQAQWADLVA 378 Query: 232 HGMSKAQIKTELF 244 G+ + E+F Sbjct: 379 QGVPPQNLHREVF 391 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 42/320 (13%) Query: 37 QQGQHLTLRSHINGEELRRSYSICSARQDR-QLRVAIKRVP---GGLFSNWANESFVPGQ 92 Q G H+ LR+ L R YSI +A +R L + +K P GG S A S +PG Sbjct: 299 QAGAHINLRT---PSGLVRQYSIVNAPTERATLTIGVKLEPDSRGGSASMHA--SALPGT 353 Query: 93 SIEAMPPMGQFNVPLDAANRKHYLAFAAGSGITPMLSIIKTTLLAEPHSQFTLVYANRAS 152 +E +P F + LD K+ + A G GITP++S+ + L F L Y R+ Sbjct: 354 HLEFVPTRNTFPL-LDTP--KYPVLIAGGIGITPLVSMAQA--LHAAGKDFRLHYFVRSD 408 Query: 153 SSVIFKEELSDLKDAYLERFNVVYVMSREQQDVELFNGRIDRAKCDAFFASWIKLQDIDT 212 V F ++ +D V++ Q+ + + + ++ Sbjct: 409 EHVSFASRMAAFQDKL-----VLHAACTPQETKSILDQVLTQSS------------QPQI 451 Query: 213 AFLCGPQEMVQAVADSLQAHGMSKAQIKTELFSAGTSAREHAARPVVGKTECEVTVIVDG 272 + CGP M+ + QA GM A ++ E+F + V K + + G Sbjct: 452 VYACGPGPMLTTIRACTQAAGMPDADVRFEIFRNDKDFGDGKPFTVKLKRNGQTITVPRG 511 Query: 273 YHNVFTMDKERESVLDAGLKHGIDLRYSCKGGVCATCRCKVVEGKVDMDANYALEDYEIA 332 E++L A ++GI + SC+ G+C +C +V G + +Y + A Sbjct: 512 -----------ETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAA 560 Query: 333 RGFVLSCQSFPVSDKLLLDF 352 +++C S +S++L LD Sbjct: 561 NTCMMACVSRAISEELELDL 580 >gi|152981474|ref|YP_001352374.1| CDP-6-deoxy-delta-3,4-glucoseen reductase [Janthinobacterium sp. Marseille] Length = 342 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 26/250 (10%) Query: 3 KFYPLTISGVKQETRDTIVVSFALPAELQDTFAYQQGQHLTLRSHINGEELRRSYSICSA 62 K P+ ++ V++ D ++++ LPA + Y+ GQ++ + + RRSYS+ +A Sbjct: 101 KKLPVRVAKVEKLGDDVMLIALQLPAS--ERLQYRAGQYIEF---LLKDGKRRSYSLGNA 155 Query: 63 -RQDRQLRVAIKRVPGGLFSNWANESFVPGQSIEAMPPMGQFNVPLDAANRKHYLAFAAG 121 D L + I+ +PGGLF++ + + P G F + D ++K + A+G Sbjct: 156 PHSDEHLTLHIRHMPGGLFTDHVFTTLKERDILRFEGPQGSFFLRED--SKKPMVLLASG 213 Query: 122 SGITPMLSIIKTTLLAEPHSQFTLVYANRASSSVIFKEELSDLKDAYLERFNVVYVMSRE 181 +G P+ +I++ L + TL + R ++ L + + FN V V+S Sbjct: 214 TGFAPIKAIVEQALHDKSQRPMTLYWGGRRPKD-LYMHALCEQWAREIPHFNYVPVISHA 272 Query: 182 QQDVELFNGRIDRAKCDAFFASWIKLQDIDT-----AFLCGPQEMVQAVADSLQAHGMSK 236 D D+ + + F ++D+ + CG MV+A QA + Sbjct: 273 TAD--------DQWQGRSGFVHKAVMEDLPNMSAYQVYACGTPVMVEAA----QAEFSAL 320 Query: 237 AQIKTELFSA 246 Q+ E F A Sbjct: 321 CQLPREEFYA 330 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 789,122 Number of extensions: 30527 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 4 Length of query: 356 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 272 Effective length of database: 910,473 Effective search space: 247648656 Effective search space used: 247648656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)