BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3989.p
         (381 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a...    64   1e-11
gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a...    55   9e-09

>gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 14/253 (5%)

Query: 12  LAGCALAAHADINVGVTVSTTGPAASLGIPEKNTIALLPTT------IAGQKINYIVLDD 65
            A  +  A   I +GVT   TGP A+ G    N   +          + G+KI  ++ D+
Sbjct: 18  FAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVLGKKIQLVIEDN 77

Query: 66  ASDTTQAVKNARRFVTENNVDVIVGSSISPNSISMTEVAAEAQTPMISLAAAARIVEPMD 125
            S+  +AV +  + + ++ V V++G+  S  ++++     E + P++  AA++  +    
Sbjct: 78  KSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVEAASSSKI--TT 135

Query: 126 AKKKWVFKTPQNDIMMSLAIAKDMVARGY----QRIAFIGYVNAYGEGWYEEFKKAAGIK 181
           A   WVF+T     M + A +K  V  GY    ++  F+   N +G G   EFKK    K
Sbjct: 136 AGNPWVFRTSPTSAMEAQAFSK--VIDGYNPAIKKADFLVVNNDWGLGAAVEFKKMLEAK 193

Query: 182 KLELVANERFAPNDTSATAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQT 241
            + +   E   P+ T  +AQ   L  +  D + + +      +  R   E+    +I  T
Sbjct: 194 GIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLAIRQAGEQRLPQRIITT 253

Query: 242 HGVANADFLRVGG 254
            G      L+  G
Sbjct: 254 GGAFPEPLLKTPG 266


>gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 381

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 133/327 (40%), Gaps = 58/327 (17%)

Query: 1   MQFARPLL------ALALAGCALAAHADINVGVTVSTTGPAASLGIPEKNTIALL----- 49
           MQF   ++       LALAG  LA    + +G     TG  A +G   +N   L      
Sbjct: 1   MQFKTKMIPLTGAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELN 60

Query: 50  --PTTIAGQKI--NYIVLDDASDTTQAVKNARRFVTENNVDVIVGSSISPNSISMTEVAA 105
                I G+K+   Y+  DDA+D  QA   A + V ++NV V++G   S  +I  + + A
Sbjct: 61  AKGVVINGKKVKLQYMPEDDAADPKQATAAATKLV-DSNVAVVIGHLNSGATIPASRIYA 119

Query: 106 EAQTPMISLAAAARIVEPMDAKK--KWVFKTPQNDIMMSLAIAKDMV-ARGYQRIAFIGY 162
            A    IS ++ +    P   ++  K  F+   ND  +   + +  V +   + +A I  
Sbjct: 120 NAGIVQISPSSTS----PKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDD 175

Query: 163 VNAYGEGWYEEFKKAAGIKKLELVANERFAPNDTSATAQALKLVAAKPDAILIA---ASG 219
             AYG+G  EEF K        +VA++      T   A    + A KPD I      A G
Sbjct: 176 RTAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVG 235

Query: 220 TPAVVPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPASN-- 277
            P +   + +K+ G            NA F+  GG   DG    + P L  A L  +N  
Sbjct: 236 GPML---QQMKQLGI-----------NAKFM--GG---DGICTGSLPGLAGAGLGENNVY 276

Query: 278 --------PIRKVALDYTGKYEAAHGK 296
                     RK  LD   K+ AA+ K
Sbjct: 277 CAEAGGVEDARKAGLD---KFRAAYKK 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 864,189
Number of extensions: 36505
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 296
Effective length of database: 906,776
Effective search space: 268405696
Effective search space used: 268405696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)