BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3988.p
         (686 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog...    83   7e-17

>gi|152979948|ref|YP_001354595.1| succinate-semialdehyde
           dehydrogenase (NADP+) [Janthinobacterium sp. Marseille]
          Length = 490

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 124/296 (41%), Gaps = 28/296 (9%)

Query: 152 GVAVHINAFNFPIWGMLEKFAPSFLAGMPCIVKPATATSYLTEAAVRLIQQSGLLPAGSL 211
           GV   I  +NFPI  +  K AP+  AG   ++KPA  T     A   L  ++G+ P G +
Sbjct: 152 GVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIAELAHRAGI-PPGVI 210

Query: 212 QLVIG------ATGDLLERLQAQDVVTFTGSADTAAKL--RAHPNLIANAIPFNAEADSL 263
            +V        A G +L        V+FTGS      L  +  P +    +     A   
Sbjct: 211 NVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVKKIGLELGGHA--- 267

Query: 264 NCAILGPDVTADDEEFELFVKEVAREMSTKAGQKCTAIRRAIVPRQHVDAVAERLAARLS 323
                 P +  DD + +  V    +     AGQ C    R  V     D   ++L A  +
Sbjct: 268 ------PFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLGAGAA 321

Query: 324 KIVVGDPALESVRMGPLASKAQQRDVEERVT-LLKQGAEVILGAGGAFQPQGEGVAAGAF 382
           KI VG+   + V  GPL      + VE+ V+  + +GA+VI G        G+  A G +
Sbjct: 322 KIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITG--------GKQHALGGY 373

Query: 383 FAPTLLLARDTGAGSPVHEVEAFGPVSTLMPYDDLDEALALAARGRGSLVASLVTR 438
           F    +L+  +     +HE E FGPV+ ++ +   DEA+A A      L +   +R
Sbjct: 374 FYEPTVLSNISPDMLIMHE-ETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSR 428


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,572,748
Number of extensions: 67700
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 596
Effective length of database: 888,291
Effective search space: 529421436
Effective search space used: 529421436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)