BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3987.p (350 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 89 3e-19 gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t... 80 2e-16 gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 73 3e-14 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 64 1e-11 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 2/194 (1%) Query: 158 LLIVSLGVHLAMVGLGLLMFGPEGTNT-RPFTELQFNLGESPVSGQSVIVLVTVAALIAV 216 ++++ +GV + M LLM+G + PF++ G VS + VLVT AL+ + Sbjct: 95 VMLIMIGVMIIMQNAELLMWGGVAKSVPSPFSQEPIVWGAISVSPIRLFVLVTALALLVI 154 Query: 217 IYVFFERTLTGKALRATAVNRLGARLVGVGINQAGKLSFAMAAGIGALCGILIAPFTIVN 276 Y+ ER+ G A+RAT ++ A++VGV ++ L+FA+ + + ++ G L+AP +V Sbjct: 155 FYLLIERSRLGLAMRATFQDKDAAKIVGVNVSHVYTLTFALGSCLASVAGALLAPVFVVT 214 Query: 277 YESGFIIALKGFVGAIFGGLASYPIAALGSVAVGLIESF-SSFWASSYKELIVFTVIIPI 335 G + +LK F I GGL + P AALG + ++E F + + +++Y++ + F VI+ + Sbjct: 215 PTMGDLASLKAFAIVILGGLGNLPGAALGGFILAIVEEFGAGYISTAYRDALGFLVILAV 274 Query: 336 LLWRSLTSHHIDEE 349 +++R I E Sbjct: 275 MIFRPQGLFTIRER 288 >gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 13/177 (7%) Query: 176 MFGPEGTNTRPFTEL----QFNLGESPVSGQSVIVLVTVAALIAVIYVFFERTLTGKALR 231 +F P+G+N++PF L ++G + +VI+L++ A+IA ++ RT G A+R Sbjct: 120 LFYPDGSNSKPFPSLLPTGSVDIGTLALRADNVILLISGLAIIAGVHFLITRTRLGMAIR 179 Query: 232 ATAVNRLGARLVGVGINQAGKLSFAMAAGIGALCGILIA-PFTIVNYESGFIIALKGFVG 290 A A + ARL+G+ L+FA+ +G+ AL G++ + +N+ G ++ + GF Sbjct: 180 AVAQDGETARLMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFSA 239 Query: 291 AIFGGLAS--------YPIAALGSVAVGLIESFSSFWASSYKELIVFTVIIPILLWR 339 AI GGL + + AAL + L+ + S+YK++ F V+I ++ W+ Sbjct: 240 AILGGLGNIYGAILGGFLFAALQVLGSALLPALIPNIPSAYKDVFAFAVVIILMAWK 296 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 21/228 (9%) Query: 128 ILLALLIVVPMGPMIYRVAYQPLAHSSVLVLLIVSLGVHLAMVGLGLLMFG------PEG 181 IL A+ + V + +I RVAY+ L ++ L LI ++GV + + L ++++G P+ Sbjct: 74 ILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAMMIWGRSPIPFPQE 133 Query: 182 TNTRPFTELQFNLGESPVSGQSVIVLVTVAALIAVIYVFFERTLTGKALRATAVNRLGAR 241 T P ++ + +S V++L+ A + ++ + E+T G+A+RAT+ N A Sbjct: 134 MPTEPL-----HIMGALISPTQVMLLILAAVAMGLLVLLIEKTRMGRAMRATSENPRVAG 188 Query: 242 LVGVGINQAGKLSFAMAAGIGALCGIL-IAPFTIVNYESGFIIALKGFVGAIFGGLASYP 300 L+GV N+ ++FA+ A + A+ G++ A ++ + GF+ LK F A+ GG+ + Sbjct: 189 LMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLGGIGNIY 248 Query: 301 IAALGSVAVGLIESFSS---------FWASSYKELIVFTVIIPILLWR 339 A LG + +GLIES + F S Y+++ F V+I +L R Sbjct: 249 GAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLR 296 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 204 VIVLVTVAALIAVIYVFFERTLTGKALRATAVNRLGARLVGVGINQAGKLSFAMAAGIGA 263 +++ V V I + Y F +T TGK LRATA NR + +G+ + + + F + +G Sbjct: 149 MVIAVAVTLAIGMAY-FLGKTKTGKILRATAENRETSAAMGINVTRVYVMVFTLGTMLGT 207 Query: 264 LCGILIAPFTIVNYESGFIIALKGFVGAIFGGLASYPIAALGSVAVGLIESFSSFWASSY 323 + G L+ P + E G + ++ F + GGL S AA+G++ VGLI + S+ + Sbjct: 208 IGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMKGAAVGALIVGLIRALSAMYYPEA 267 Query: 324 KELIVFTVIIPILLWR 339 + L ++ +++ +L+W+ Sbjct: 268 EILAIYAIVLAVLIWK 283 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 652,168 Number of extensions: 22706 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 4 Length of query: 350 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 266 Effective length of database: 910,473 Effective search space: 242185818 Effective search space used: 242185818 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)