BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3986.p (596 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 216 2e-57 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 191 1e-49 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 156 3e-39 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 138 9e-34 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 138 1e-33 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 216 bits (551), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 161/257 (62%), Gaps = 6/257 (2%) Query: 342 EVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITSGKL 401 ++IL++ K+FGGL A++DV+ + G+I GLIGPNGAGK+T FN++TG+ +G Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 402 DYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILASLV 461 + G+ + + +A GIARTFQ++RL M+ LEN +G R +G+ ++ Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVR----THQGLFGAVF 119 Query: 462 --RGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLLD 519 + RREEA I A LE VG+ + R A L+ G QR LEIARAL DP LL LD Sbjct: 120 HHKAARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALD 179 Query: 520 EPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTPA 579 EPAAG+ EK L LL K++ EG +LL+EHD+ +M L D I V+++G IAEG PA Sbjct: 180 EPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPA 239 Query: 580 QIQVHPAVLEAYLGGAQ 596 +Q PAV+EAYLGG+ Sbjct: 240 DVQKDPAVIEAYLGGSH 256 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/257 (40%), Positives = 156/257 (60%), Gaps = 6/257 (2%) Query: 339 TRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITS 398 T L++Q + GL AV++ SF V AG+IV LIGPNGAGK+TT+N+++G + TS Sbjct: 4 TNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTS 63 Query: 399 GKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILA 458 G++ G + G++ I+ G+ R+FQ + +V EN +G Q G+L Sbjct: 64 GRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKG----QCGVLQ 119 Query: 459 SLVRGN--RREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALL 516 +L+R RREEA + ++A L +GL + A +L+ G+QR+L + AL P +L Sbjct: 120 ALLRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVL 179 Query: 517 LLDEPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEG 576 LLDEPAAGL E +A ++ ++ G+ VLLVEHDM VM ++DHIVV+ +G IA G Sbjct: 180 LLDEPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATG 239 Query: 577 TPAQIQVHPAVLEAYLG 593 +P++IQ P V+ AYLG Sbjct: 240 SPSEIQNDPEVIRAYLG 256 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 161/277 (58%), Gaps = 12/277 (4%) Query: 328 DAAALAQLPKPTR--GEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKST 385 +AA + + +PT G ++ V +FGGL A++ ++ + GE++GL+GPNG+GK+T Sbjct: 2 NAATMNHVERPTHTIGGKLVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTT 61 Query: 386 TFNLVTGVLSITSGKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAF 445 FN++TG+ TSG + Y+GQ + G + ++I G+ARTFQ RL ++V +N +G + Sbjct: 62 FFNVLTGLYKATSGSIIYKGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDY 121 Query: 446 RRGEFAPQRGILASLVRGN--RREEARILS--EARRQLERVGLGELMHRPAGSLALGQQR 501 + G+ +L + R E + EA + L M P G+ + +R Sbjct: 122 QH----MNHGLFFNLFQRKAFRAEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRR 177 Query: 502 ILEIARALCCDPALLLLDEPAAGLRLKEKQALAALLDKLRG--EGMAVLLVEHDMDFVMQ 559 +E+ RAL P LLLLDEP+AG+ E +AL + ++RG E + ++L+EH+M+ + + Sbjct: 178 RIEVCRALLSQPRLLLLDEPSAGMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIER 237 Query: 560 LTDHIVVMEFGSKIAEGTPAQIQVHPAVLEAYLGGAQ 596 +TD +V +G KIAEGT A+I P V AYLG A+ Sbjct: 238 ITDRCIVFNYGKKIAEGTYAEITADPNVQTAYLGEAE 274 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 138 bits (348), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 138/239 (57%), Gaps = 9/239 (3%) Query: 339 TRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITS 398 + +V+L + +G +A+++V SV GE V ++GPNGAGK+T N++TG+ T+ Sbjct: 2 STNDVLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 399 GKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILA 458 G +++ G ++AG+ + D+A+RG+AR FQ + P ++V E A+ A + QR Sbjct: 62 GHVNFDGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSAC---SYLNQRWNGF 118 Query: 459 SLVRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLL 518 + G+R+ ++ R + GL + GSL G++++L++A A P ++LL Sbjct: 119 GHLFGSRKINDIVV----RTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLL 174 Query: 519 DEPAAGLRLKEKQA-LAALLDKLRGEGM-AVLLVEHDMDFVMQLTDHIVVMEFGSKIAE 575 DEP AG+ +K + LL + G+ A++LVEHDMD V + + IV M+ G KIA+ Sbjct: 175 DEPTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIAD 233 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 139/256 (54%), Gaps = 19/256 (7%) Query: 340 RGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITSG 399 RG +L ++ ++G +N +S V GEIV LIG NGAGKSTT + G+ + G Sbjct: 12 RGSNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHG 71 Query: 400 KLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILAS 459 + G ++G S ++ GI+ + R+ P ++V EN MGA+R Sbjct: 72 SIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYR------------- 118 Query: 460 LVRGNRREEARILSEARRQLERV-GLGELMHRPAGSLALGQQRILEIARALCCDPALLLL 518 R+++A++ + R ++ L E + + AG+L+ G+Q++L IARAL P L++ Sbjct: 119 -----RKDKAKVRDDMERMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMF 173 Query: 519 DEPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTP 578 DEP+ GL + + +L+ ++R EG VL+VE + + + D ++E G + +G+ Sbjct: 174 DEPSLGLAPNIVEQIFSLIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSS 233 Query: 579 AQIQVHPAVLEAYLGG 594 A+++ +P + AYLGG Sbjct: 234 AEMRANPEIRRAYLGG 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,191,673 Number of extensions: 43956 Number of successful extensions: 416 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 70 Length of query: 596 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 507 Effective length of database: 891,988 Effective search space: 452237916 Effective search space used: 452237916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)