BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3985.p (278 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 202 2e-53 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 201 3e-53 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 194 4e-51 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 167 6e-43 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 155 2e-39 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 202 bits (513), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 158/238 (66%), Gaps = 3/238 (1%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +L+++GL YG + A+ L + G+++T+IG NGAGK+T L A+ G +P G Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLP-NCRVEGH 63 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 I + G+ + + E V + L++VPE R +FT M++++NLL+GA+ R + + G D Sbjct: 64 IEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR--DDKDGIAADID 121 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 + +FPRLKER Q AGTLSGGE+QMLA+ RALM+ P++L+LDEPS+GL+P++ ++I Sbjct: 122 KWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFE 181 Query: 205 IISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 +I + + G+ LLVEQNA+ ALQ A+ YV+E G + G A + +D K+ E+YLG Sbjct: 182 VIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 201 bits (512), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 106/238 (44%), Positives = 153/238 (64%), Gaps = 5/238 (2%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +L++ ++ RYG + +L + G+IVT+IG NGAGKST L A+ G P A G Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPL---AHGS 72 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 I G VS E + G+S PE R +F + V +N+ +GAY RR ++ D + Sbjct: 73 IRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAY--RRKDKAKVRDDME 130 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 ++ FPRL+ER +Q AGTLSGGE+QMLA+ RALM++P+++M DEPSLGLAP I ++I S Sbjct: 131 RMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFS 190 Query: 205 IISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 +I ++RS G L+VEQNA AAL + D GY+LE G +V +G + + A+ +I +YLG Sbjct: 191 LIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 153/237 (64%), Gaps = 5/237 (2%) Query: 26 LQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGRI 85 L V GL+ Y KV L D ++ + G+I ++G NGAGKSTL+ +++G P G I Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPP---RQGEI 60 Query: 86 LFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQDF 145 L+ G++++ + +A G+S +PE R++F M V +NL LGA+ + + D+ Sbjct: 61 LWGGKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAF--LESSSTVVRDRLAR 118 Query: 146 VYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILSI 205 VY +FPRLKER Q AGT+SGGE+ M+++GR LMA+P++L++DEPSLGL+PL KE + Sbjct: 119 VYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKV 178 Query: 206 ISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 I Q+ + G+ LLVEQNAR L ++ +GYVL G ++ +G A L+++ + +Y G Sbjct: 179 IKQINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 150/240 (62%), Gaps = 13/240 (5%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 LL++ L A YGK L +++++G+IV+++G NGAG+ST + A MG + AA+G Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV----AATGT 59 Query: 85 ILFQGEDVSQMEVEERVAR-GLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQ 143 I F+G+++ + R+AR GL V E RE+F +++V NL+LGA + R Sbjct: 60 IRFKGKEILGLPTY-RIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSA------- 111 Query: 144 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEIL 203 D +Y LFPRL+ER+ AG LSGGE+QMLA+ R LM P+++M+DEP+ GLAP + + Sbjct: 112 DDMYRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVA 171 Query: 204 SIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLGV 263 + + +L GV+ LL+EQ AL+++ YV+ G++V EG L AD + + +LGV Sbjct: 172 NFLQELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 146/240 (60%), Gaps = 9/240 (3%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +LQV L+ YG L +LS+ G+ ++++G NG GK+TLL +MG +P A+G Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPV---AAGN 57 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 + G D+++++ +R A G++ VP+ RE+F + VE+NLL+G + +G+ + + + Sbjct: 58 VSLDGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATK--SGKKASVIKGE 115 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 VY LFP LKE + G LSGG++Q LA+ RAL+A+P++++LDEP+ G+ P I K+I Sbjct: 116 -VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGR 174 Query: 205 IISQLRSTG-VATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLGV 263 +IS LR G + LL EQ A ++AD VL GE+V G + D V+ +L V Sbjct: 175 VISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDN--VKKHLAV 232 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 548,267 Number of extensions: 20394 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 59 Length of query: 278 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 196 Effective length of database: 917,867 Effective search space: 179901932 Effective search space used: 179901932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)