BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3981.p
         (443 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons...    62   8e-11

>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response
           regulator [Janthinobacterium sp. Marseille]
          Length = 1096

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 179/428 (41%), Gaps = 70/428 (16%)

Query: 46  VGASLALTYGARNALIGMVLSVISYGLINACISRYAMRTGLSVALFSR-ILFGRLGASLA 104
           +G ++AL YG  NA+  ++  ++   L    IS YA R G+ + L +R   FG +G++++
Sbjct: 32  IGGAIALNYGFANAVTAILTVMLITFLTGLPISYYAARYGIDMDLLTRGAGFGYMGSTIS 91

Query: 105 TLIFFSTAIYYAVFEGSVIAVALHH--LYPSLLYPVAALIVVLYSVPLV------FGSVQ 156
           +LI+ S  I +   E +++AVAL     +P  ++ V   I  L+ VPLV         +Q
Sbjct: 92  SLIYASFTIIFFALEAAILAVALQMWIQWPLWIWYV---ICALFIVPLVARGITLISRLQ 148

Query: 157 HWLDKFNGVLLPFYLLGLLMALVLAVSQYGYQPQ-WLNFGPAVPPADGWWSCFTYYMGVW 215
            W         P +L+ LL+A  +A+  +  +P+ +  F   V       S      GV 
Sbjct: 149 MWTQ-------PLWLI-LLVAPYIAI--FWKKPEAYTEFAQFVGAISKSNSLDPVMFGVA 198

Query: 216 VLMMFTF--------DYARFGKPEDATYHGRFNFGMPFYLVTILLNGAA----------- 256
             + F+         D+ RF  PE    + R       +   I++ GA            
Sbjct: 199 ATVAFSLVAQIGEQVDFLRF-LPERTAENKRR------WWTAIIVAGAGWIIPGGLKMLG 251

Query: 257 GIYLASSIPQEGALSEVSVVMAILKLMG--------VW----GLLFVWVTQTRINTANYY 304
           G +LA  + Q G  +  ++    + L+G        VW     LLFV V+Q +IN  N Y
Sbjct: 252 GAFLAYLVFQSGVPAGNAMEPTRMYLLGFSYLFSDPVWILAITLLFVVVSQVKINLTNAY 311

Query: 305 LATVNMQAFFGNLLGLRASRLVWAVVVGAVVYGLMLADVFSYLLKALAYQGVFVVAWVGV 364
             ++    FF  L      R+VW V    +   LM   VF+ L   L       VAWVG 
Sbjct: 312 AGSLAWSNFFARLTHSHPGRVVWLVFNCLLALLLMNLGVFAALENVLGLYSNVAVAWVGA 371

Query: 365 ALAHILTASDHGVVADGAP-------GINRVGLGAWFCGVLLGFVLMEMAGFWQSLSAPL 417
            +A ++     G    G          IN VGLG       +G  +   +G W    A  
Sbjct: 372 LVADLVINKPLGWSPKGIEFKRAHLYDINPVGLGTMLLSASIG--IAAFSGVWGHKVAAF 429

Query: 418 TFVVSMGV 425
           +  +++G+
Sbjct: 430 SPFITLGM 437


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,001,416
Number of extensions: 40689
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 357
Effective length of database: 903,079
Effective search space: 322399203
Effective search space used: 322399203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)