BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3978.p
         (462 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981095|ref|YP_001354662.1| biotin carboxylase [Janthinobac...   430   e-122
gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase la...    57   2e-09

>gi|152981095|ref|YP_001354662.1| biotin carboxylase
           [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/447 (50%), Positives = 304/447 (68%), Gaps = 5/447 (1%)

Query: 7   KLLVANRGEIAVRIIRAAQALGIPTVAACSEADQDSLAARMADEVQIIGPARADRSYLNG 66
           K+L+ANRGEIA+RI RA + +GI TV   SEAD+D+   ++ADE   IGPA +  SYLN 
Sbjct: 4   KILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSSLSYLNM 63

Query: 67  EALLHAAKASGANAIHPGYGFLSENADFAEAVTAAGLIFVGPQAETIRRMGDKAEARRTA 126
            A++ AA+ + A AIHPGYGFLSENADFAE V  +G +F+GP++++IR MGDK  A++  
Sbjct: 64  PAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSDSIRMMGDKVSAKQAM 123

Query: 127 AAAGVPVVPGSPGEL-EDLPSALACAEQIGYPLLIKASAGGGGRGIRIAHDAAELAREFP 185
             AGVP VPGS G L +D    +  A +IGYP++IKA+ GGGGRG+R+ H  A L     
Sbjct: 124 IKAGVPCVPGSEGALPDDAKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVT 183

Query: 186 VAQGEAKAAFGSGAVYLERFIGQARHIEVQILGDGQR-AVHLFERECSLQRRRQKVFEEA 244
           + + EA +AFG+  VY+E+++   RH+E+QIL D  + A+ L ER+CS+QRR QKV EEA
Sbjct: 184 MTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVLEEA 243

Query: 245 PSPALTPAQRSALCDSAVRLAEGLRYRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHPVTE 304
           P+P +       + D        + YRGAGT E+L++  +GEF+FIEMNTR+QVEHPVTE
Sbjct: 244 PAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLYE--NGEFYFIEMNTRVQVEHPVTE 301

Query: 305 MITGIDLVQAMLRIAGGEPLPWQQSEIQMEGAALEMRINAEDPARNFFPCPGTVAELRWP 364
           MITGID+VQ  +RIA GE L ++Q ++ + G A+E RINAEDP + F P PG +     P
Sbjct: 302 MITGIDIVQEQIRIAAGEKLRFRQRDVILSGHAIECRINAEDPFK-FTPSPGKIVSWHAP 360

Query: 365 QGPGIRVESHLYPGYRVPPYYDSLLAKLVVHGADRAQAIARAQAALAATQLTGMATTLPL 424
            GPGIRV+SH Y GY VPP+YDS++ K++ +GA R QAI R Q AL+   + G+ T +PL
Sbjct: 361 GGPGIRVDSHAYAGYYVPPHYDSMVGKVIAYGATREQAIKRMQIALSEMVVEGIQTNIPL 420

Query: 425 HQWLLADERVRHARFDTGALESWLAER 451
           H+ L+ D R      +   LE  LA +
Sbjct: 421 HRELMVDARFIEGGTNIHYLEQKLANK 447


>gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase large
           chain [Janthinobacterium sp. Marseille]
          Length = 1076

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 34/201 (16%)

Query: 146 SALACAEQIGYPLLIKASAGGGGRGIRIAHDAAELAREFPVAQGEAKAAFGSGAVYLERF 205
            AL  A++IGYPL+++ S   GGR + I H+  +L R       EA        V L+RF
Sbjct: 694 DALRLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMR----EAVKVSHDSPVLLDRF 749

Query: 206 IGQARHIEVQILGDGQRA-------------VHLFERECSLQRRRQKVFEEAPSPALTPA 252
           +  A  ++V  L DG+R              VH  +  CSL           P  +L+  
Sbjct: 750 LNDAIEVDVDCLSDGERTFIGGVMEHIEQAGVHSGDSACSL-----------PPYSLSQE 798

Query: 253 QRSALCDSAVRLAEGLRYRGAGTLEYLFDAHSGE------FFFIEMNTRIQVEHPVTEMI 306
               L      +A+GL   G   +++       +       F +E+N R     P     
Sbjct: 799 TIDELKRQTSLMAKGLNVVGLMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRTVPYVSKA 858

Query: 307 TGIDLVQAMLRIAGGEPLPWQ 327
           TG+ L +   R   G+ L  Q
Sbjct: 859 TGLQLAKIAARCMVGQSLDSQ 879


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 959,548
Number of extensions: 36504
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 375
Effective length of database: 899,382
Effective search space: 337268250
Effective search space used: 337268250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)