BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3975.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 99 3e-22 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 89 2e-19 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 87 1e-18 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 86 3e-18 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 83 2e-17 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 35/313 (11%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 M I LRQ+R+FV AE +AA+ LH++Q ++ +IQ LEALLG LF R+ + + LT Sbjct: 1 MNIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPD------NTASGSLRVAASYTVLGYFLPHHLQRL 114 +G L A IL+ + LPD + ASG L +A T LPH L+ Sbjct: 61 PAGIALLPEAQRILQQT-----AALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREF 115 Query: 115 SQSYPGIKLHVHEKERAEIEQSLVEGDIDMAVVLTS-------NLRHRDIAYETLFGSVR 167 ++YP +++ + E L +G ID+ +++ L + + E L +V Sbjct: 116 REAYPQVEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVP 175 Query: 168 RLWLPARHRLGERSVVNLSEVVNEPFILLTVDEAD---KTALRYWNQSGRKPNILMRTSS 224 + R + V L V P I+ A L + +G P+I Sbjct: 176 KGLKAVRG----KQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQ 231 Query: 225 IEAVRSMVANGSGVAILSDLVYRPWSLEGLR---IETVLLMDHVPAMNVGLAWRKGVKFT 281 ++ + +V+ G G+A++ P S+ L+ ++ L D P + G+AWR+ + Sbjct: 232 MQTIIGLVSAGMGIALV------PQSVSNLKRPGVDYKALADKTPLVETGMAWRRD-NTS 284 Query: 282 PAMEAVREYFRQS 294 P + A E R+ Sbjct: 285 PVLNAFLELLRKK 297 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 3/256 (1%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 M +TLRQ+R FVA AE+ Q + AA LHI+QS+++ I+ELE L LF R + + LT Sbjct: 1 MNLTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLT 60 Query: 61 DSGRHFLNHAYSILRSVDDA-MKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYP 119 + G FL A +L ++ A M+S N G + VA S + L ++ +Q +P Sbjct: 61 EHGEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHP 120 Query: 120 GIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLGE 179 GIKL + + I++ L+ GD+D +V N +I+ +F L +P H L + Sbjct: 121 GIKLMLRDVAEESIKKRLLNGDVDFSVGTQLN-PESEISELPIFSDHFVLLMPKGHPLTK 179 Query: 180 RSVVNLSEVVNEPFILLTVDEADKTALR-YWNQSGRKPNILMRTSSIEAVRSMVANGSGV 238 ++ + L + P I + + + L + + NI S + +MV NG G+ Sbjct: 180 QTRIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNGMGI 239 Query: 239 AILSDLVYRPWSLEGL 254 IL ++ S +G+ Sbjct: 240 TILPANAHQLTSTQGI 255 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 M L +R VA A+ G +S+AA I+ S+ ++ ++ E G LF RS +GM LT Sbjct: 1 MHFDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASG--SLRVAASYTVLGYFLPHHLQRLSQSY 118 +GR L+ A +L ++ +K L D T +LR+A + FLP L Y Sbjct: 61 PAGRLVLDRARHVLLETEN-LKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADY 119 Query: 119 PGIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLG 178 P I L + E + A++ ++ G++++ VL NL D+ L +P+ H L Sbjct: 120 PEIDLQLVEHKSADVLLAVQSGEVEVG-VLDGNLATSDVIPLPFRHDKLVLLVPSGHALA 178 Query: 179 ERSVVNLSEVVNEPFILLTVDEADKTALRYWN-QSGRKPNILMRTSSIEAVRSMVANGSG 237 ER V L + + F+ L + A + + Q+ R + +R S A+ +VA +G Sbjct: 179 ERPSVQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVAEQAG 238 Query: 238 VAILSD 243 +A+L + Sbjct: 239 IAMLPE 244 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 18/285 (6%) Query: 2 AITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTD 61 +I LR +RYFV AE G +++AA + I Q ++ I+ LE LG LF R P+GM LT+ Sbjct: 3 SIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTE 62 Query: 62 SGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYT---VLGYFLPHHLQRLSQSY 118 SG+ L A IL V+ ++ + + S R+A +T L F+P ++ Q Sbjct: 63 SGQALLIDARLILEQVNTTIEG-VRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKS 121 Query: 119 PGIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLG 178 PG+ + V E E+ + L +D+A + + + ET+ + LP HRL Sbjct: 122 PGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLA 181 Query: 179 E-RSVVNLSEVVNEPFILLTVDEAD---KTALRYWNQSGRKPNILMRTSSIEAVRSMVAN 234 + R + L+ + + FIL + + +G P ++ + S+VA Sbjct: 182 QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAA 241 Query: 235 GSGVAILSDLVYRPWSLEGLRIETV--LLMDHVPAMN--VGLAWR 275 G GV+I+ P S+ ++++ V L ++ P + + LA+R Sbjct: 242 GLGVSIV------PASMRHVQLKEVVYLKLEQAPDLRAPLHLAYR 280 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 16/297 (5%) Query: 5 LRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTDSGR 64 LR +RYF+A A+ ++A+ LHI+Q +++ I+++E LG LF R + + LT +G Sbjct: 3 LRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGE 62 Query: 65 HFLNHAYSILRSVD---DAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPGI 121 F +A L VD DA+ +N G + + + LP L ++ YPGI Sbjct: 63 LFQVYAKRALLEVDAGLDALNE--LENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 122 KLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLGERS 181 K+ V EIE+ L++GD+ V + I E LF L + H L + Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPS-STEQINVEPLFTVPLALVVGDHHPLVGSA 179 Query: 182 VVNLSEVVNEPFILLTVDEAD--KTALRYWNQSGRKPNILMRTSSIEAVRSMVANGSGVA 239 + L+E +NE +++ DE + K +G P I+M ++IE + + V + S Sbjct: 180 GITLNE-LNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLAT 238 Query: 240 ILS-DLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVKFTPAMEAVREYFRQSF 295 ILS +LV L + + + VGL R+ + A A+ + RQ F Sbjct: 239 ILSANLVDEMPGLHQVPLTPTV------THTVGLFTRRNSHLSAAARALVDTIRQRF 289 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 661,877 Number of extensions: 26017 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 22 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)