BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3972.p (267 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 434 e-123 gi|152980609|ref|YP_001354932.1| ABC transport system ATP-bindin... 194 4e-51 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 159 2e-40 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 125 4e-30 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 117 6e-28 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/263 (80%), Positives = 239/263 (90%) Query: 1 LPNIVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGR 60 + N+VEIRDLHF YG+RPIL+ L+MDFPRGKV+AVMGGSGSGKTT+LRLIGGQL+PQ G+ Sbjct: 1 MSNLVEIRDLHFAYGERPILSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQAGQ 60 Query: 61 VEVDGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDL 120 V VDG+ V L TK +Y LRRKMGMLFQ+GALFTD++VF+NVAFPLREHT L + LIRDL Sbjct: 61 VTVDGQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLREHTGLSEELIRDL 120 Query: 121 VLMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTA 180 VLMKL+ VGLRNAA L PAEISGGMARRVALAR+IALDP LIMYDEPFAGLDPISMG+TA Sbjct: 121 VLMKLHTVGLRNAAQLMPAEISGGMARRVALARSIALDPELIMYDEPFAGLDPISMGMTA 180 Query: 181 NLIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFV 240 NLIR+LNDALGST+ILVSHDV+ESF+IADYVYFLS G IVA+GTP EM S+DPYVKQFV Sbjct: 181 NLIRKLNDALGSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTPAEMMASSDPYVKQFV 240 Query: 241 HAQADGPVPFHYPGKSLAEDLGL 263 +A+ DGPVPFHYPGKSLA+DLGL Sbjct: 241 NAEPDGPVPFHYPGKSLADDLGL 263 >gi|152980609|ref|YP_001354932.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 283 Score = 194 bits (493), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 106/242 (43%), Positives = 152/242 (62%), Gaps = 1/242 (0%) Query: 3 NIVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVE 62 I+EI +L R+GD + L + +G++V+++GGSGSGKT +LR + G QP G V Sbjct: 18 TIIEIENLSTRFGDVVVHENLSLKINQGEIVSLVGGSGSGKTVLLRQMLGLNQPASGSVR 77 Query: 63 VDGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVL 122 V GE++ + L LR + GMLFQ GALF+ +TVFDNVA P+RE L LIRD L Sbjct: 78 VFGEDINRIDAGHLQQLRNRWGMLFQQGALFSALTVFDNVAQPMRELRVLPKQLIRDAAL 137 Query: 123 MKLNAVGLRNAAALK-PAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTAN 181 +KL G+ ALK PA++SGGM +RVALARA+AL+P L+ DEP AGLDP + + Sbjct: 138 LKLQMAGIGPEHALKMPADLSGGMIKRVALARALALEPELLFLDEPTAGLDPNASESFVS 197 Query: 182 LIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFVH 241 LIR L D + T ++V+HD++ FA++ V L+ I+A P ++ E P+++ F Sbjct: 198 LIRELRDEMHLTVVMVTHDLDTLFALSSRVAVLADKHIIAYCRPDKVVEFKHPFIETFFR 257 Query: 242 AQ 243 + Sbjct: 258 GE 259 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 144/240 (60%), Gaps = 9/240 (3%) Query: 5 VEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEVD 64 +E++++ ++G+ L + +DFP G++ A++G SG GKTT+LR+I G QP G+V +D Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREH---TDLDDTLIRDLV 121 GE+ + ++ R++G +FQ+ ALF MTVF+N+AF LR T ++ I++ V Sbjct: 63 GEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 122 LMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTAN 181 L V L A P ++SGG +R+ALARA+A++P +++ DEPF LD Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 182 LIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRES-TDPYVKQFV 240 +RRL+D L TSI V+HD E+ +AD + ++ G + G P+++ + P+V F+ Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 3/238 (1%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 ++ I ++ YG +L G+ MD G+V+A++G SGSGK+T+LR I G +G + V Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 G ++ + +L LR K+GM+FQ LF ++V N+ + + R L + Sbjct: 63 AGSHLGK-SELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMK 121 Query: 124 KLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLI 183 L VGL P ++SGG +RVA+ARA++++P ++ DE + LDP + N++ Sbjct: 122 NLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVV 181 Query: 184 RRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRES-TDPYVKQFV 240 R L G T I+V+H++ + + D V F+ GK+ G P+++ + P +KQF+ Sbjct: 182 RGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 ++EIR+L R+GD ++ + + G+ ++G SG GKTT+LR+I G P G++ + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 DG ++ + +Q R + +FQN ALF MTV N+AFPL E + I+ V Sbjct: 63 DGVDLTGVPPEQ-----RPVRTVFQNYALFPHMTVGGNIAFPL-EMANTPKAEIQKKVDE 116 Query: 124 KLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDP-ISMGVTANL 182 L V L AA P E+SGG +RV++ARA+ P L++ DEP + LD + + L Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 183 IRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKI 219 I L +G T I V+HD E+ A++ + ++ G++ Sbjct: 177 I-NLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQV 212 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 644,893 Number of extensions: 26886 Number of successful extensions: 283 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 64 Length of query: 267 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 185 Effective length of database: 917,867 Effective search space: 169805395 Effective search space used: 169805395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)