BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3971.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980680|ref|YP_001354988.1| ABC transport system permease p...   436   e-124
gi|152980330|ref|YP_001354931.1| ABC transport system permease p...    97   8e-22

>gi|152980680|ref|YP_001354988.1| ABC transport system permease
           protein [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  436 bits (1121), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/254 (85%), Positives = 237/254 (93%)

Query: 6   VSALGRSVREFAVGVGFAARMFINMLGASLGLLRRPRLITDQIHFIGNYSLVIITVSGLF 65
           +  +GR VREF V +GFA R F  ++GAS GLLRR RL+T QIHFIGNYSLV+I VSGLF
Sbjct: 5   LETIGRLVREFVVNIGFATRTFFGIIGASGGLLRRFRLVTSQIHFIGNYSLVLIAVSGLF 64

Query: 66  VGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKA 125
           VGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKA
Sbjct: 65  VGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKA 124

Query: 126 GEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAIFSAVGVMGGYVVGVLLIGVDDGAF 185
           GEQLSAMEMMAVNPLQRV+APRFWAGVI+MP+LAAIFSAVG++GGY+VGV LIGVD+GAF
Sbjct: 125 GEQLSAMEMMAVNPLQRVLAPRFWAGVIAMPILAAIFSAVGILGGYIVGVQLIGVDEGAF 184

Query: 186 WSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQGYEAQPTPEGVARATTRTVVIASLT 245
           WSQMQGGVDVWND+ NGV+KS+VFG AVTF+AL+QGYEAQPTPEGVARATTRTVVIASL+
Sbjct: 185 WSQMQGGVDVWNDIVNGVIKSIVFGFAVTFIALYQGYEAQPTPEGVARATTRTVVIASLS 244

Query: 246 VLGLDFLLTALMFS 259
           VL LDFLLTALMFS
Sbjct: 245 VLWLDFLLTALMFS 258


>gi|152980330|ref|YP_001354931.1| ABC transport system permease
           protein [Janthinobacterium sp. Marseille]
          Length = 374

 Score = 97.4 bits (241), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 17/259 (6%)

Query: 16  FAVGVGFAARMFINMLG---------ASLG-LLRRP-----RLITDQIHFIGNYSLVIIT 60
           F+  + F  RM  +MLG           +G  +R+P     + I+  I   G  +L I  
Sbjct: 114 FSAYLQFKLRMADHMLGFITLIGQLVMDMGRFIRQPQRGPWKEISANIFHTGYQALGITA 173

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           + G  +G VL       L+++G +  L  ++ +S+ RELGP++ A+L AGR+G+S+TA++
Sbjct: 174 LVGFLIGVVLSYLSAQQLHQFGGDIFLVNILGMSVIRELGPLLAAILVAGRSGSSITAQL 233

Query: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAIFSAVGVMGGYVVGVLLIGV 180
           G+M+  E+L AM +M +    R++ P+  A  ISMP+L     A+ ++GG     + +G+
Sbjct: 234 GVMRVTEELDAMLVMGLPHGYRLIMPKVIALAISMPLLVVWTDAMALIGGMAAANVELGL 293

Query: 181 DDGAFWSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQGYEAQPTPEGVARATTRTVV 240
               F  ++   V + N    G+ K VVFG  +  VA   G   +P  E +   TT +VV
Sbjct: 294 SFKYFLRELPDAVPLAN-YWIGLGKGVVFGSLIALVACHFGLRIKPNTESLGEGTTISVV 352

Query: 241 IASLTVLGLDFLLTALMFS 259
            A +TV+ L   + A++FS
Sbjct: 353 TA-ITVVILADAVFAIVFS 370


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 495,289
Number of extensions: 17284
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)