BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3970.p
         (158 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981713|ref|YP_001354987.1| ABC-type transport system invol...   237   3e-64

>gi|152981713|ref|YP_001354987.1| ABC-type transport system involved
           in resistance to organic solvents, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  237 bits (604), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 1   MQRKSLDAWVGIFVLLGVAALAFLALKVGNMSSMSFGQKTYALKANFDNIGGLKSRAAVK 60
           MQRKSLD WVG+FVLLG AAL FLA+K GNMSS+SF Q  Y +   FDNIGGLK RA VK
Sbjct: 1   MQRKSLDLWVGLFVLLGAAALFFLAMKAGNMSSLSFEQ-VYPVVTRFDNIGGLKPRAPVK 59

Query: 61  SAGVVVGRVDSIRFDDQTFRAVVTLNMDESYKFPKDSSAKILTSGLLGEQYIGIEPGGDT 120
           SAGVVVGRV  I FDD++++A VTLN++  Y FPKDSSAKILTSGLLGEQY+G+EPGGDT
Sbjct: 60  SAGVVVGRVADISFDDKSYQATVTLNIESRYVFPKDSSAKILTSGLLGEQYVGLEPGGDT 119

Query: 121 ANLAAGDTIKMTQSAIVLENLIGQFLYSKAAEGKDDSK 158
            NLAAGD I MTQSA+VLENLI QFL+SKA EGK+D K
Sbjct: 120 VNLAAGDRITMTQSAMVLENLISQFLFSKATEGKEDQK 157


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 289,093
Number of extensions: 10570
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 82
Effective length of database: 940,049
Effective search space: 77084018
Effective search space used: 77084018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)