BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3969.p
         (249 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981208|ref|YP_001354986.1| surface lipoprotein [Janthinoba...   301   3e-83

>gi|152981208|ref|YP_001354986.1| surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 240

 Score =  301 bits (771), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 168/206 (81%), Gaps = 1/206 (0%)

Query: 29  GCAS-TSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDTVVPTPVQHGVGNFFGNIG 87
           GCAS T+NN  DPLEGFNR MFSFNDTVD+VALKPAA AY  V+P+  Q G+ NFFGNIG
Sbjct: 18  GCASSTANNQADPLEGFNRAMFSFNDTVDRVALKPAATAYQDVLPSFAQTGISNFFGNIG 77

Query: 88  DVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPREKSDFGQTLGKWGV 147
           DVW+ +N  LQG+ E G+S  MRVA+N+TFG GG+LD+A+EA + + K DFGQTLGKWGV
Sbjct: 78  DVWTMVNNFLQGKGEAGMSDVMRVAVNSTFGFGGLLDIASEAGIQKHKEDFGQTLGKWGV 137

Query: 148 GSGPYVVLPFFGPSTVRDTAGMPVDLYGDLWTYKRPARWRNVGAVVRIVDRRAQLLDAST 207
           GSGPYVVLP FGPST+RD+A +PVD+ GDLWTY  P   RNVGAVVR++D RA  L+A+ 
Sbjct: 138 GSGPYVVLPLFGPSTLRDSAALPVDIAGDLWTYATPVDVRNVGAVVRVIDLRASALNATN 197

Query: 208 LLEDAALDKYDFVRDAYLQRRQSQIN 233
           LLED ALD+Y F+R AYLQRR+SQ+N
Sbjct: 198 LLEDVALDRYTFIRGAYLQRRESQVN 223


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 554,132
Number of extensions: 24043
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 168
Effective length of database: 921,564
Effective search space: 154822752
Effective search space used: 154822752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)