BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3968.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981576|ref|YP_001354985.1| ABC-type transport system invol...   288   2e-79

>gi|152981576|ref|YP_001354985.1| ABC-type transport system involved
           in resistance to organic solvents, auxiliary component
           [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  288 bits (738), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 168/200 (84%), Gaps = 1/200 (0%)

Query: 7   LFAIAAFAIPALSFSGVAAAQEAPDALVKRISSEVLDTAKNDKDIQAGDNSRIMQLVEQK 66
           +F    FA+ ALSF+G AAAQEAPD L+KRIS EV+  AK+DK+IQ+G+  RI Q+V++K
Sbjct: 3   IFKKLTFAVAALSFAGYAAAQEAPDVLIKRISEEVMAIAKSDKEIQSGNPRRIQQVVDEK 62

Query: 67  ILPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKIVFKPLR 126
           ILP+VDF+RMT LAAGRYWR ATPDQQKQL  +FRSLL++TYSGA+SQ+RDQK+ ++PLR
Sbjct: 63  ILPHVDFQRMTALAAGRYWRDATPDQQKQLTNEFRSLLMYTYSGAISQIRDQKLEYRPLR 122

Query: 127 AAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGDGWKLYDVNVLGAWLVEAYRGTFASEI 186
           A P DTEV VN+QVI  R GEPIQLSYRL K   GWK+YDVNVLGAWLVE Y+G+FA+EI
Sbjct: 123 ADPADTEVIVNTQVIQPR-GEPIQLSYRLAKAPTGWKIYDVNVLGAWLVETYKGSFAAEI 181

Query: 187 NKGGIDGLIKALTDKNQQLA 206
           +K G+DGLIK L +KN++LA
Sbjct: 182 SKSGMDGLIKTLAEKNKKLA 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 443,117
Number of extensions: 17224
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)