BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3967.p
         (97 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982467|ref|YP_001354984.1| hypothetical protein mma_3294 [...    93   3e-21

>gi|152982467|ref|YP_001354984.1| hypothetical protein mma_3294
          [Janthinobacterium sp. Marseille]
          Length = 95

 Score = 93.2 bits (230), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 54/83 (65%)

Query: 1  MFKPGTSLTFTNASAVLREGLSAIAAGQASIDVSGVSVVDSSAVATLLAWRRAAAGRGAA 60
          MF+PGTSLTF NA   L  GL AIAAGQ   D + V  VDS+AVAT+L WRR A  R  +
Sbjct: 1  MFQPGTSLTFDNAKTALSAGLQAIAAGQTEFDFAKVETVDSAAVATMLVWRRTANARALS 60

Query: 61 LDFGILPANLQSLADLYGVTALL 83
          L F  LP NL+SL  LY V  L+
Sbjct: 61 LSFNNLPGNLRSLISLYDVAELI 83


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 136,532
Number of extensions: 2350
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 1,221,021
Length adjustment: 66
Effective length of query: 31
Effective length of database: 977,019
Effective search space: 30287589
Effective search space used: 30287589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)