BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3966.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport sy... 516 e-148 gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy... 236 1e-63 gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP... 188 3e-49 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 122 3e-29 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 116 2e-27 >gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 303 Score = 516 bits (1328), Expect = e-148, Method: Compositional matrix adjust. Identities = 247/303 (81%), Positives = 276/303 (91%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 MAA+QI +++K Y++L+AL GVSL++EEGEFFGLLGPNGAGKTTLISIIAGLNRADSG+V Sbjct: 1 MAAIQINNVEKSYRALKALNGVSLSIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGNV 60 Query: 61 TLHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL 120 T+HGHDVVS+YR AR LGVVPQELVFDPFFTVRETLRMQSGY+GL +ND WIDEVM +L Sbjct: 61 TIHGHDVVSNYRQARKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNNDAWIDEVMHHL 120 Query: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNR 180 DLTNKAD NMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLW FI RLNR Sbjct: 121 DLTNKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNR 180 Query: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPDG 240 EGHT+VLTTHYLEEAQALCNR+AMLK G+VVALD+T LI+RISGSQ+V++L GSLPD Sbjct: 181 EGHTVVLTTHYLEEAQALCNRVAMLKGGQVVALDTTSTLIKRISGSQLVVKLASGSLPDE 240 Query: 241 LKALVTHPEELLAGNKFTLRVTDYKEVEPILATLRTSGVEIDDLQLQQADLEDVFIQIMG 300 LK LV+HPEEL+ GNKFTLRV DY +VEPILA LR +GV I+D+QLQQADLEDVFIQIM Sbjct: 241 LKELVSHPEELVFGNKFTLRVNDYSDVEPILAKLRLAGVVIEDMQLQQADLEDVFIQIME 300 Query: 301 DEK 303 EK Sbjct: 301 GEK 303 >gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 348 Score = 236 bits (603), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 186/308 (60%), Gaps = 20/308 (6%) Query: 4 LQITDIKKRYQS-LQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTL 62 + + + K+Y S QAL G+ L + GE F LLGPNGAGKTTLISII G+ SG+V Sbjct: 45 ISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVLA 104 Query: 63 HGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENLDL 122 GHD+V DYRAAR K+G+VPQEL D F TV T+ G FG + I++V+ +L L Sbjct: 105 DGHDIVQDYRAARTKIGLVPQELSTDAFETVWATVNFSRGIFGKPKDHAHIEKVLRSLSL 164 Query: 123 TNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNREG 182 K D+ + ALSGGMKRRV++A+AL H+P ++ LDEPTAGVDVELR+ +W + L G Sbjct: 165 WEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRESG 224 Query: 183 HTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPDGLK 242 TI+LTTHY+EEA+ + +RI +++ G+++ ++ L+ ++ Q+ L L+ Sbjct: 225 VTIILTTHYIEEAEEMADRIGVIRKGELILVEDKAALMAKLGKKQLRLHLQH-------- 276 Query: 243 ALVTHPEELLA--------GNKFTLRVTDYKE---VEPILATLRTSGVEIDDLQLQQADL 291 L T P EL GN+ E + +L L +G++ DLQ Q+ L Sbjct: 277 PLQTIPAELANWQLELSDDGNELVYTFDAQSEQTGIAELLKKLGENGIDFKDLQSSQSSL 336 Query: 292 EDVFIQIM 299 E++F+ ++ Sbjct: 337 EEIFVNLV 344 >gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 310 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 2 AALQITDIKKRY----QSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADS 57 A L + D+ K + + + G+S A+ GE +GLLGPNGAGKTT + + GL DS Sbjct: 5 AILAVADLHKSFGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDS 64 Query: 58 GSVTLHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSN--DKWIDE 115 GS+TL H + + R AR ++GVVPQ DP FTV E L + YFG+ I Sbjct: 65 GSITLVDHAIPAHAREARARVGVVPQGDNLDPDFTVEENLLVFGRYFGIPDKTIQARIPS 124 Query: 116 VMENLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFI 175 ++E +LTNK D + LSGGM+RR+ +A+ALV+ P +I +DEPT G+D + R +W + Sbjct: 125 LLEFANLTNKKDAQIGELSGGMRRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERL 184 Query: 176 GRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRG 235 L G TI LTTH+++EA+ LC+R+A++ +GK++A S LI + SQ++ G Sbjct: 185 KALLARGKTIFLTTHFMDEAERLCDRLAVMDYGKLIAEGSPRELIAQHIESQVLEVYGDG 244 Query: 236 SLPDGLKALVTHPEELLAGNKFTLRVTDYKEVEPILATL-RTSGVEIDDLQLQQADLEDV 294 + G + + TD + +P+L L +TS V + A+LEDV Sbjct: 245 AAAWGAQQGRAQATRYEVSGETIFCYTD--DAQPLLHGLAQTSNVRYVH---RPANLEDV 299 Query: 295 FIQIMGDE 302 F+++ G E Sbjct: 300 FLKLTGRE 307 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 10/220 (4%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 MA L+I ++ +R+ + +SL++E GEFF LLGP+G GKTTL+ +IAG + D+G + Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 TLHGHD---VVSDYRAARMKLGVVPQELVFDPFFTV--RETLRMQSGYFGLSSNDKWIDE 115 L G D V + R R V Q P TV ++ + K +DE Sbjct: 61 LLDGVDLTGVPPEQRPVR----TVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDE 116 Query: 116 VMENLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFI 175 +E++ LT A LSGG ++RV +A+ALV +P +++LDEP + +D +LR+ + + Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 176 GRLNRE-GHTIVLTTHYLEEAQALCNRIAMLKFGKVVALD 214 L +E G T + TH EA AL +RIA++ G+V LD Sbjct: 177 INLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLD 216 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 19/228 (8%) Query: 4 LQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTLH 63 L I + KR+ LQAL V++ + +G+ +GL+GPNGAGKTT ++I GL +AD+GS L Sbjct: 7 LNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELA 66 Query: 64 G--HDVVSDYRAARMKLGVVPQELVFDPFFTVRET------LRMQSGYFGLSSNDKWID- 114 G + + ++ A+ + Q + T E +R G FG + K Sbjct: 67 GKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARR 126 Query: 115 ----------EVMENLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 E++E + + A+ R LS G +RR+ +A+AL P ++ LDEP AG++ Sbjct: 127 EEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 186 Query: 165 VELRQTLWHFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVA 212 + L + ++ EG TI+L H ++ LC+RI +L +GK +A Sbjct: 187 ATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 676,898 Number of extensions: 28089 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 66 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)