BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3965.p
         (254 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982300|ref|YP_001354982.1| ABC-2 type transporter protein ...   405   e-114
gi|152982267|ref|YP_001353310.1| ABC transporter inner membrane ...   155   3e-39

>gi|152982300|ref|YP_001354982.1| ABC-2 type transporter protein
           [Janthinobacterium sp. Marseille]
          Length = 251

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 222/250 (88%)

Query: 1   MIGFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPG 60
           MIGF+TLFYKE+LRFWKVATQT+ AP++TA+LYLLIFGHVL+D VQVYPGV YT FL+PG
Sbjct: 1   MIGFQTLFYKEMLRFWKVATQTVAAPILTAVLYLLIFGHVLEDHVQVYPGVKYTAFLIPG 60

Query: 61  LVMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVF 120
           LVMMSVLQNAFANSSSSLIQSKITGNLVFVLL PLSHWE+F  YV+AAVVRGLVVG GVF
Sbjct: 61  LVMMSVLQNAFANSSSSLIQSKITGNLVFVLLPPLSHWELFSAYVMAAVVRGLVVGTGVF 120

Query: 121 VVTVWFGHIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLA 180
           +VT WF  + FVAP WIL+FA+LGA +LG++GLIAGIWAEKFDQLAAFQNFLI+P TFL+
Sbjct: 121 IVTAWFADMSFVAPWWILIFAILGAAMLGTMGLIAGIWAEKFDQLAAFQNFLIMPATFLS 180

Query: 181 GVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAV 240
           GVFYS+HSLPPFWQ VSH NPFFYMIDGFRYGFFGQSD+ P+ S  +V  F + L+ + +
Sbjct: 181 GVFYSVHSLPPFWQTVSHMNPFFYMIDGFRYGFFGQSDVNPLVSSTVVAFFLVLLAGVGM 240

Query: 241 HMLKSGYKLR 250
            +LKSGYKLR
Sbjct: 241 SLLKSGYKLR 250


>gi|152982267|ref|YP_001353310.1| ABC transporter inner membrane
           subunit [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  155 bits (391), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 139/246 (56%)

Query: 5   RTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGLVMM 64
           R ++  E+ R W+   Q+I +PV++  LY ++FG  +  R+    GV+Y  F+VPGL+MM
Sbjct: 7   RAIYKFELARTWRTLMQSIASPVISTSLYFVVFGAAIGSRMVEVNGVSYGAFIVPGLIMM 66

Query: 65  SVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFVVTV 124
           +++  + +N+S  +   K  G +  +L  P+S+ E+  GYV AA  + +++G  +     
Sbjct: 67  ALMTESISNASFGIFMPKYAGTIYEILSAPVSYVEIVIGYVGAAATKSIILGVLILATAR 126

Query: 125 WFGHIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLAGVFY 184
            F   +   PL ++ F +L A      G I GIWA  F++L      ++ PL FL G FY
Sbjct: 127 LFVSFEIAHPLLMITFLILTAVTFSMFGFIIGIWATGFEKLQIIPMLIVTPLAFLGGSFY 186

Query: 185 SIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAVHMLK 244
           SI  LP  WQ ++  NP  Y+I GFR+ F+G SD++ + S+ + +VF  A      ++ K
Sbjct: 187 SISMLPAVWQKIALLNPVVYLISGFRWSFYGVSDVSVVVSIVMTLVFLSACMAAVWYIFK 246

Query: 245 SGYKLR 250
           +GY+L+
Sbjct: 247 TGYRLK 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 485,367
Number of extensions: 16819
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 173
Effective length of database: 921,564
Effective search space: 159430572
Effective search space used: 159430572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)