BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3962.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980364|ref|YP_001354979.1| ATP phosphoribosyltransferase c...   389   e-110

>gi|152980364|ref|YP_001354979.1| ATP phosphoribosyltransferase
           catalytic subunit [Janthinobacterium sp. Marseille]
          Length = 220

 Score =  389 bits (999), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/213 (89%), Positives = 203/213 (95%)

Query: 2   TQQLTLALSKGRIFEETLPLLQAAGITVAEDPESSRKLILPTNDPNVRVIIVRASDVPTY 61
           TQQLTLALSKGRIFEETLPLL+AAGI V EDPE+SRKLIL TND NVRVIIVRASDVPTY
Sbjct: 5   TQQLTLALSKGRIFEETLPLLEAAGIKVTEDPETSRKLILQTNDANVRVIIVRASDVPTY 64

Query: 62  VQYGAADFGVAGKDVLMEHGGEGLYQPIDLNIAKCRLSVAVQEGFDYANAVRQGARLRVV 121
           VQYGAADFGVAGKDVL+EHGGEGLYQPIDLNIA CR+SVAV++GFDY +AV+QGARLRVV
Sbjct: 65  VQYGAADFGVAGKDVLLEHGGEGLYQPIDLNIANCRMSVAVKDGFDYESAVQQGARLRVV 124

Query: 122 TKYVNTAREHFASKGVHVDLIKLYGSMELGPLVGLSDAIVDLVSTGGTLRANKLVEVEHI 181
           TKYV TAREHFA+KGVHVDLIKLYGSMELGPLVGL+DAIVDLVSTG TLRAN LVEVE I
Sbjct: 125 TKYVQTAREHFAAKGVHVDLIKLYGSMELGPLVGLADAIVDLVSTGSTLRANHLVEVERI 184

Query: 182 IDISSRLVVNQAALKLKRERLQPILDAFEKASK 214
           +DISSRLVVN+AALKLKRERLQPIL+AFEKASK
Sbjct: 185 MDISSRLVVNKAALKLKRERLQPILEAFEKASK 217


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 473,801
Number of extensions: 19060
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)