BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3961.p
         (438 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980559|ref|YP_001354978.1| histidinol dehydrogenase [Janth...   738   0.0  

>gi|152980559|ref|YP_001354978.1| histidinol dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 437

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/437 (82%), Positives = 389/437 (89%)

Query: 1   MSIAIRKLDSAEAGFRDKLSAVLAFEASEDEAIDRAAATILADVKARGDAAVLEYTQRFD 60
           MSI IRK DS    FR +L+ VLAFEASEDEAIDRA   IL DVK RGD AVLEYT++FD
Sbjct: 1   MSIQIRKFDSTHPDFRQQLADVLAFEASEDEAIDRAVLRILEDVKKRGDVAVLEYTKQFD 60

Query: 61  RLQAASVAGLEIGKEALQAALAGLPEARRHALQTAADRVRAYHERQKKECGSDGFLYREA 120
            ++A S+  LEI    LQAALA L   RR ALQTAADRVRAYHERQK E GSDGF Y EA
Sbjct: 61  HVEADSLQALEIKSADLQAALAQLSPVRRAALQTAADRVRAYHERQKNEIGSDGFSYTEA 120

Query: 121 DGTELGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPDGVKNELV 180
           DGT LGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTP+GV+NELV
Sbjct: 121 DGTILGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPNGVQNELV 180

Query: 181 LAAAAIAGVDRVFTIGGAQAVGALAYGTTTIPQVDKIVGPGNAYVAAAKRRVFGVVGIDM 240
           LAAAA++GVDRVFTIGGAQAV ALAYGT TIPQVDKIVGPGNAYVAAAKRRVFG VGIDM
Sbjct: 181 LAAAAMSGVDRVFTIGGAQAVAALAYGTATIPQVDKIVGPGNAYVAAAKRRVFGTVGIDM 240

Query: 241 IAGPSEILVICDGATDPDWIAMDLFSQAEHDELAQSILLCPDADYIAQVEASINRLLEDM 300
           IAGPSEILV+CDG T+PDWIAMDLFSQAEHDELAQSIL+CPDA Y+  V  SINR L DM
Sbjct: 241 IAGPSEILVVCDGTTNPDWIAMDLFSQAEHDELAQSILICPDAAYLDAVADSINRQLADM 300

Query: 301 PRKDVIRTSLTDRGALVKVRDMEQACEIANMIAAEHLEISAQEPQQWADQIRHAGAMFLG 360
           PRKDVI TSLT+RGA++KVRDM++ACEIAN+IAAEHLEIS + PQQWAD+IRHAGAMFLG
Sbjct: 301 PRKDVITTSLTNRGAMIKVRDMDEACEIANLIAAEHLEISTENPQQWADKIRHAGAMFLG 360

Query: 361 RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSVIRVSEQGAQTLGKIAAELA 420
           RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSS+++VSE GAQTLGK+AAELA
Sbjct: 361 RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSMLQVSEGGAQTLGKVAAELA 420

Query: 421 YGEGLQAHARSAELRLK 437
           YGEGLQAHARSAE RLK
Sbjct: 421 YGEGLQAHARSAEYRLK 437


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 993,236
Number of extensions: 41560
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 352
Effective length of database: 903,079
Effective search space: 317883808
Effective search space used: 317883808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)